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Cluster: HRGMv2_0558_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0558_1 HRGMv2_0558_1_11 14178 15224 - 1.A.23.4.3
NULL(UNKNOWN) HRGMv2_0558_1 HRGMv2_0558_1_12 15385 16095 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0558_1 HRGMv2_0558_1_13 16180 16659 - 1.A.29.1.5
pfam HRGMv2_0558_1 HRGMv2_0558_1_14 16730 17065 - Zn_ribbon_8
STP HRGMv2_0558_1 HRGMv2_0558_1_15 17136 18365 - FmdA_AmdA
TC HRGMv2_0558_1 HRGMv2_0558_1_16 18775 20163 - 9.B.145.1.2
NULL(UNKNOWN) HRGMv2_0558_1 HRGMv2_0558_1_17 20375 21313 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0558_1 HRGMv2_0558_1_18 21679 23088 + 1.I.1.1.3
pfam HRGMv2_0558_1 HRGMv2_0558_1_19 23151 26612 + tRNA_anti-codon | PHP | DNA_pol3_alpha | HHH_6 | DNA_pol3_finger
CAZyme HRGMv2_0558_1 HRGMv2_0558_1_20 26618 27421 - GT2
TC HRGMv2_0558_1 HRGMv2_0558_1_21 27651 29378 + 3.A.1.106.1
CAZyme HRGMv2_0558_1 HRGMv2_0558_1_22 29375 30418 + GT9
CAZyme HRGMv2_0558_1 HRGMv2_0558_1_23 30427 31482 + GT4
CAZyme HRGMv2_0558_1 HRGMv2_0558_1_24 31479 32315 + GT2
CAZyme HRGMv2_0558_1 HRGMv2_0558_1_25 32302 33435 + GT4
Gene ID: HRGMv2_0558_1_11
Type: TC
Location: 14178 - 15224 (-)
Gene ID: HRGMv2_0558_1_12
Type:
Location: 15385 - 16095 (+)
Gene ID: HRGMv2_0558_1_13
Type: TC
Location: 16180 - 16659 (-)
Gene ID: HRGMv2_0558_1_14
Type: pfam
Location: 16730 - 17065 (-)
Gene ID: HRGMv2_0558_1_15
Type: STP
Location: 17136 - 18365 (-)
Gene ID: HRGMv2_0558_1_16
Type: TC
Location: 18775 - 20163 (-)
Gene ID: HRGMv2_0558_1_17
Type:
Location: 20375 - 21313 (-)
Gene ID: HRGMv2_0558_1_18
Type: TC
Location: 21679 - 23088 (+)
Gene ID: HRGMv2_0558_1_19
Type: pfam
Location: 23151 - 26612 (+)
Gene ID: HRGMv2_0558_1_20
Type: CAZyme
Location: 26618 - 27421 (-)
Gene ID: HRGMv2_0558_1_21
Type: TC
Location: 27651 - 29378 (+)
Gene ID: HRGMv2_0558_1_22
Type: CAZyme
Location: 29375 - 30418 (+)
Gene ID: HRGMv2_0558_1_23
Type: CAZyme
Location: 30427 - 31482 (+)
Gene ID: HRGMv2_0558_1_24
Type: CAZyme
Location: 31479 - 32315 (+)
Gene ID: HRGMv2_0558_1_25
Type: CAZyme
Location: 32302 - 33435 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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