Cluster: HRGMv2_0556_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0556
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0556_1 | HRGMv2_0556_1_300 | 349817 | 351028 | + | 2.A.23.1.3 |
| pfam | HRGMv2_0556_1 | HRGMv2_0556_1_301 | 351096 | 351773 | - | PAS_6 | HTH_22 |
| STP | HRGMv2_0556_1 | HRGMv2_0556_1_302 | 351940 | 353139 | + | Aminotran_1_2 |
| TC | HRGMv2_0556_1 | HRGMv2_0556_1_303 | 353160 | 354392 | + | 2.A.23.2.6 |
| pfam | HRGMv2_0556_1 | HRGMv2_0556_1_304 | 354544 | 354951 | + | RseC_MucC |
| NULL(UNKNOWN) | HRGMv2_0556_1 | HRGMv2_0556_1_305 | 354948 | 355373 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0556_1 | HRGMv2_0556_1_306 | 355370 | 357664 | - | GH57 |
Gene ID: HRGMv2_0556_1_300
Type: TC
Location: 349817 - 351028 (+)
Type: TC
Location: 349817 - 351028 (+)
Gene ID: HRGMv2_0556_1_301
Type: pfam
Location: 351096 - 351773 (-)
Type: pfam
Location: 351096 - 351773 (-)
Gene ID: HRGMv2_0556_1_302
Type: STP
Location: 351940 - 353139 (+)
Type: STP
Location: 351940 - 353139 (+)
Gene ID: HRGMv2_0556_1_303
Type: TC
Location: 353160 - 354392 (+)
Type: TC
Location: 353160 - 354392 (+)
Gene ID: HRGMv2_0556_1_304
Type: pfam
Location: 354544 - 354951 (+)
Type: pfam
Location: 354544 - 354951 (+)
Gene ID: HRGMv2_0556_1_305
Type:
Location: 354948 - 355373 (+)
Type:
Location: 354948 - 355373 (+)
Gene ID: HRGMv2_0556_1_306
Type: CAZyme
Location: 355370 - 357664 (-)
Type: CAZyme
Location: 355370 - 357664 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Brachyspirae
Order
Brachyspirales
Family
Brachyspiraceae
Genus
Brachyspira
Species
Brachyspira pilosicoli
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.