Cluster: HRGMv2_0556_CGC27
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0556
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0556_2 | HRGMv2_0556_2_284 | 333079 | 334554 | - | 2.A.50.2.1 |
| pfam | HRGMv2_0556_2 | HRGMv2_0556_2_285 | 334805 | 336619 | + | Toprim | Zn_ribbon_DnaG | DNAG_N | Toprim_2 | Toprim_3 | Toprim_4 |
| STP | HRGMv2_0556_2 | HRGMv2_0556_2_286 | 336609 | 338372 | + | Sigma70_r2 | Sigma70_r3 | Sigma70_r4 |
| TC | HRGMv2_0556_2 | HRGMv2_0556_2_287 | 338428 | 340299 | - | 4.C.1.1.14 |
| CAZyme | HRGMv2_0556_2 | HRGMv2_0556_2_288 | 340392 | 341513 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_0556_2 | HRGMv2_0556_2_289 | 341866 | 342129 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0556_2 | HRGMv2_0556_2_290 | 342147 | 343253 | + | 2.A.119.1.2 |
Gene ID: HRGMv2_0556_2_284
Type: TC
Location: 333079 - 334554 (-)
Type: TC
Location: 333079 - 334554 (-)
Gene ID: HRGMv2_0556_2_285
Type: pfam
Location: 334805 - 336619 (+)
Type: pfam
Location: 334805 - 336619 (+)
Gene ID: HRGMv2_0556_2_286
Type: STP
Location: 336609 - 338372 (+)
Type: STP
Location: 336609 - 338372 (+)
Gene ID: HRGMv2_0556_2_287
Type: TC
Location: 338428 - 340299 (-)
Type: TC
Location: 338428 - 340299 (-)
Gene ID: HRGMv2_0556_2_288
Type: CAZyme
Location: 340392 - 341513 (-)
Type: CAZyme
Location: 340392 - 341513 (-)
Gene ID: HRGMv2_0556_2_289
Type:
Location: 341866 - 342129 (+)
Type:
Location: 341866 - 342129 (+)
Gene ID: HRGMv2_0556_2_290
Type: TC
Location: 342147 - 343253 (+)
Type: TC
Location: 342147 - 343253 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Brachyspirae
Order
Brachyspirales
Family
Brachyspiraceae
Genus
Brachyspira
Species
Brachyspira pilosicoli
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.