Cluster: HRGMv2_0556_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0556
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0556_1 | HRGMv2_0556_1_531 | 614051 | 615475 | + | 2.A.35.1.2 |
| STP | HRGMv2_0556_1 | HRGMv2_0556_1_532 | 615558 | 615767 | + | HMA |
| pfam | HRGMv2_0556_1 | HRGMv2_0556_1_533 | 615772 | 616356 | + | RuvA_N | RuvA_C | HHH_5 |
| TC | HRGMv2_0556_1 | HRGMv2_0556_1_534 | 616372 | 617505 | + | 2.A.1.2.90 |
| CAZyme | HRGMv2_0556_1 | HRGMv2_0556_1_535 | 617506 | 618768 | - | GT30 |
Gene ID: HRGMv2_0556_1_531
Type: TC
Location: 614051 - 615475 (+)
Type: TC
Location: 614051 - 615475 (+)
Gene ID: HRGMv2_0556_1_532
Type: STP
Location: 615558 - 615767 (+)
Type: STP
Location: 615558 - 615767 (+)
Gene ID: HRGMv2_0556_1_533
Type: pfam
Location: 615772 - 616356 (+)
Type: pfam
Location: 615772 - 616356 (+)
Gene ID: HRGMv2_0556_1_534
Type: TC
Location: 616372 - 617505 (+)
Type: TC
Location: 616372 - 617505 (+)
Gene ID: HRGMv2_0556_1_535
Type: CAZyme
Location: 617506 - 618768 (-)
Type: CAZyme
Location: 617506 - 618768 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Brachyspirae
Order
Brachyspirales
Family
Brachyspiraceae
Genus
Brachyspira
Species
Brachyspira pilosicoli
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.