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Cluster: HRGMv2_0555_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0555_20 HRGMv2_0555_20_4 2920 5151 + GT2 | GT4
pfam HRGMv2_0555_20 HRGMv2_0555_20_5 5154 5996 + Epimerase | RmlD_sub_bind
TC HRGMv2_0555_20 HRGMv2_0555_20_6 5989 7008 + 9.B.18.2.1
TC HRGMv2_0555_20 HRGMv2_0555_20_7 7319 10195 + 1.B.52.2.1
pfam HRGMv2_0555_20 HRGMv2_0555_20_8 10329 11651 + Flg_bb_rod | Flg_bbr_C | FlgE_D2 | LlgE_F_G_D1
pfam HRGMv2_0555_20 HRGMv2_0555_20_9 11707 11931 + FlbD
TC HRGMv2_0555_20 HRGMv2_0555_20_10 11991 12782 + 1.A.30.1.4
TC HRGMv2_0555_20 HRGMv2_0555_20_11 12818 13621 + 1.A.30.1.4
Gene ID: HRGMv2_0555_20_4
Type: CAZyme
Location: 2920 - 5151 (+)
Gene ID: HRGMv2_0555_20_5
Type: pfam
Location: 5154 - 5996 (+)
Gene ID: HRGMv2_0555_20_6
Type: TC
Location: 5989 - 7008 (+)
Gene ID: HRGMv2_0555_20_7
Type: TC
Location: 7319 - 10195 (+)
Gene ID: HRGMv2_0555_20_8
Type: pfam
Location: 10329 - 11651 (+)
Gene ID: HRGMv2_0555_20_9
Type: pfam
Location: 11707 - 11931 (+)
Gene ID: HRGMv2_0555_20_10
Type: TC
Location: 11991 - 12782 (+)
Gene ID: HRGMv2_0555_20_11
Type: TC
Location: 12818 - 13621 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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