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Cluster: HRGMv2_0555_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0555_19 HRGMv2_0555_19_15 17630 19171 + 3.B.1.1.2
pfam HRGMv2_0555_19 HRGMv2_0555_19_16 19215 19529 + OAD_gamma
TC HRGMv2_0555_19 HRGMv2_0555_19_17 19567 19977 + 3.B.1.1.2
TC HRGMv2_0555_19 HRGMv2_0555_19_18 19987 21126 + 3.B.1.1.5
CAZyme HRGMv2_0555_19 HRGMv2_0555_19_19 21224 22987 + GT2
NULL(UNKNOWN) HRGMv2_0555_19 HRGMv2_0555_19_20 23412 23945 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0555_19 HRGMv2_0555_19_21 24095 25204 + Ala_racemase_C | Ala_racemase_N
TC HRGMv2_0555_19 HRGMv2_0555_19_22 25238 26620 + 2.A.25.1.9
Gene ID: HRGMv2_0555_19_15
Type: TC
Location: 17630 - 19171 (+)
Gene ID: HRGMv2_0555_19_16
Type: pfam
Location: 19215 - 19529 (+)
Gene ID: HRGMv2_0555_19_17
Type: TC
Location: 19567 - 19977 (+)
Gene ID: HRGMv2_0555_19_18
Type: TC
Location: 19987 - 21126 (+)
Gene ID: HRGMv2_0555_19_19
Type: CAZyme
Location: 21224 - 22987 (+)
Gene ID: HRGMv2_0555_19_20
Type:
Location: 23412 - 23945 (+)
Gene ID: HRGMv2_0555_19_21
Type: pfam
Location: 24095 - 25204 (+)
Gene ID: HRGMv2_0555_19_22
Type: TC
Location: 25238 - 26620 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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