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Cluster: HRGMv2_0555_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0555_3 HRGMv2_0555_3_22 19008 19943 + 3.A.1.34.1
TC HRGMv2_0555_3 HRGMv2_0555_3_23 19977 20888 + 3.A.1.34.1
TC HRGMv2_0555_3 HRGMv2_0555_3_24 20892 21680 + 3.A.1.34.1
pfam HRGMv2_0555_3 HRGMv2_0555_3_25 22001 22240 + OAD_gamma
TC HRGMv2_0555_3 HRGMv2_0555_3_26 22286 24079 + 3.B.1.1.1
TC HRGMv2_0555_3 HRGMv2_0555_3_27 24110 25486 + 3.B.1.1.1
pfam HRGMv2_0555_3 HRGMv2_0555_3_28 25550 26134 + BioY
pfam HRGMv2_0555_3 HRGMv2_0555_3_29 26326 27135 - Asp_Glu_race
CAZyme HRGMv2_0555_3 HRGMv2_0555_3_30 27474 28283 + GT8
Gene ID: HRGMv2_0555_3_22
Type: TC
Location: 19008 - 19943 (+)
Gene ID: HRGMv2_0555_3_23
Type: TC
Location: 19977 - 20888 (+)
Gene ID: HRGMv2_0555_3_24
Type: TC
Location: 20892 - 21680 (+)
Gene ID: HRGMv2_0555_3_25
Type: pfam
Location: 22001 - 22240 (+)
Gene ID: HRGMv2_0555_3_26
Type: TC
Location: 22286 - 24079 (+)
Gene ID: HRGMv2_0555_3_27
Type: TC
Location: 24110 - 25486 (+)
Gene ID: HRGMv2_0555_3_28
Type: pfam
Location: 25550 - 26134 (+)
Gene ID: HRGMv2_0555_3_29
Type: pfam
Location: 26326 - 27135 (-)
Gene ID: HRGMv2_0555_3_30
Type: CAZyme
Location: 27474 - 28283 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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