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Cluster: HRGMv2_0552_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0552_3 HRGMv2_0552_3_35 39951 40763 + GT11
pfam HRGMv2_0552_3 HRGMv2_0552_3_36 40802 41344 + DUF3575
TC HRGMv2_0552_3 HRGMv2_0552_3_37 41395 43464 + 1.B.14.6.8
NULL(UNKNOWN) HRGMv2_0552_3 HRGMv2_0552_3_38 43469 46297 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0552_3 HRGMv2_0552_3_39 47496 49982 - TonB_dep_Rec_b-barrel | Plug | CarboxypepD_reg | CarbopepD_reg_2 | OMP_b-brl_3
CAZyme HRGMv2_0552_3 HRGMv2_0552_3_40 50338 51984 - GH20
CAZyme HRGMv2_0552_3 HRGMv2_0552_3_41 52009 53100 - CE2
CAZyme HRGMv2_0552_3 HRGMv2_0552_3_42 53171 55336 - GH163
CAZyme HRGMv2_0552_3 HRGMv2_0552_3_43 55665 56750 + GH10
Gene ID: HRGMv2_0552_3_35
Type: CAZyme
Location: 39951 - 40763 (+)
Gene ID: HRGMv2_0552_3_36
Type: pfam
Location: 40802 - 41344 (+)
Gene ID: HRGMv2_0552_3_37
Type: TC
Location: 41395 - 43464 (+)
Gene ID: HRGMv2_0552_3_38
Type:
Location: 43469 - 46297 (+)
Gene ID: HRGMv2_0552_3_39
Type: pfam
Location: 47496 - 49982 (-)
Gene ID: HRGMv2_0552_3_40
Type: CAZyme
Location: 50338 - 51984 (-)
Gene ID: HRGMv2_0552_3_41
Type: CAZyme
Location: 52009 - 53100 (-)
Gene ID: HRGMv2_0552_3_42
Type: CAZyme
Location: 53171 - 55336 (-)
Gene ID: HRGMv2_0552_3_43
Type: CAZyme
Location: 55665 - 56750 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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