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Cluster: HRGMv2_0552_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0552_10 HRGMv2_0552_10_7 7612 8793 + 1.B.57.4.6
pfam HRGMv2_0552_10 HRGMv2_0552_10_8 8804 9286 + YgbB
TC HRGMv2_0552_10 HRGMv2_0552_10_9 9346 11196 + 2.A.47.4.8
NULL(UNKNOWN) HRGMv2_0552_10 HRGMv2_0552_10_10 11266 11385 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0552_10 HRGMv2_0552_10_11 12244 13515 + GT4
CAZyme HRGMv2_0552_10 HRGMv2_0552_10_12 13519 14289 + GT2
peptidase HRGMv2_0552_10 HRGMv2_0552_10_13 14504 15937 + C44.UNW
NULL(UNKNOWN) HRGMv2_0552_10 HRGMv2_0552_10_14 15999 16121 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0552_10 HRGMv2_0552_10_15 17150 18088 - CBM50
Gene ID: HRGMv2_0552_10_7
Type: TC
Location: 7612 - 8793 (+)
Gene ID: HRGMv2_0552_10_8
Type: pfam
Location: 8804 - 9286 (+)
Gene ID: HRGMv2_0552_10_9
Type: TC
Location: 9346 - 11196 (+)
Gene ID: HRGMv2_0552_10_10
Type:
Location: 11266 - 11385 (-)
Gene ID: HRGMv2_0552_10_11
Type: CAZyme
Location: 12244 - 13515 (+)
Gene ID: HRGMv2_0552_10_12
Type: CAZyme
Location: 13519 - 14289 (+)
Gene ID: HRGMv2_0552_10_13
Type: peptidase
Location: 14504 - 15937 (+)
Gene ID: HRGMv2_0552_10_14
Type:
Location: 15999 - 16121 (+)
Gene ID: HRGMv2_0552_10_15
Type: CAZyme
Location: 17150 - 18088 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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