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Cluster: HRGMv2_0552_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0552_7 HRGMv2_0552_7_18 17917 20511 - 3.A.9.1.2
pfam HRGMv2_0552_7 HRGMv2_0552_7_19 20692 22785 - OMP_b-brl_3
TC HRGMv2_0552_7 HRGMv2_0552_7_20 22873 24141 - 3.D.5.1.1
TC HRGMv2_0552_7 HRGMv2_0552_7_21 24158 24784 - 3.D.5.1.1
TC HRGMv2_0552_7 HRGMv2_0552_7_22 24790 25413 - 3.D.5.1.1
pfam HRGMv2_0552_7 HRGMv2_0552_7_23 25443 26150 - FMN_bind
TC HRGMv2_0552_7 HRGMv2_0552_7_24 26153 27322 - 3.D.5.1.1
pfam HRGMv2_0552_7 HRGMv2_0552_7_25 27326 28675 - NQRA_N | NQRA_SLBB | NQRA_2nd
pfam HRGMv2_0552_7 HRGMv2_0552_7_26 28923 33278 + TamB
CAZyme HRGMv2_0552_7 HRGMv2_0552_7_27 33302 35389 + GH20
Gene ID: HRGMv2_0552_7_18
Type: TC
Location: 17917 - 20511 (-)
Gene ID: HRGMv2_0552_7_19
Type: pfam
Location: 20692 - 22785 (-)
Gene ID: HRGMv2_0552_7_20
Type: TC
Location: 22873 - 24141 (-)
Gene ID: HRGMv2_0552_7_21
Type: TC
Location: 24158 - 24784 (-)
Gene ID: HRGMv2_0552_7_22
Type: TC
Location: 24790 - 25413 (-)
Gene ID: HRGMv2_0552_7_23
Type: pfam
Location: 25443 - 26150 (-)
Gene ID: HRGMv2_0552_7_24
Type: TC
Location: 26153 - 27322 (-)
Gene ID: HRGMv2_0552_7_25
Type: pfam
Location: 27326 - 28675 (-)
Gene ID: HRGMv2_0552_7_26
Type: pfam
Location: 28923 - 33278 (+)
Gene ID: HRGMv2_0552_7_27
Type: CAZyme
Location: 33302 - 35389 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0552_7_19 vegetarian > omnivore 1.68763 0.01057

🧭 Explore Read Mapping of CGC

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