Cluster: HRGMv2_0552_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0552
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0552_6 | HRGMv2_0552_6_21 | 25131 | 27464 | + | GH92 |
| CAZyme | HRGMv2_0552_6 | HRGMv2_0552_6_22 | 27563 | 28849 | + | GH28 |
| pfam | HRGMv2_0552_6 | HRGMv2_0552_6_23 | 28991 | 29437 | + | NfeD |
| TC | HRGMv2_0552_6 | HRGMv2_0552_6_24 | 29474 | 30430 | + | 8.A.21.2.2 |
| pfam | HRGMv2_0552_6 | HRGMv2_0552_6_25 | 30439 | 31533 | + | Epimerase_2 |
| pfam | HRGMv2_0552_6 | HRGMv2_0552_6_26 | 31757 | 32173 | - | DUF1232 |
| TC | HRGMv2_0552_6 | HRGMv2_0552_6_27 | 33103 | 34560 | + | 2.A.102.4.10 |
Gene ID: HRGMv2_0552_6_21
Type: CAZyme
Location: 25131 - 27464 (+)
Type: CAZyme
Location: 25131 - 27464 (+)
Gene ID: HRGMv2_0552_6_22
Type: CAZyme
Location: 27563 - 28849 (+)
Type: CAZyme
Location: 27563 - 28849 (+)
Gene ID: HRGMv2_0552_6_23
Type: pfam
Location: 28991 - 29437 (+)
Type: pfam
Location: 28991 - 29437 (+)
Gene ID: HRGMv2_0552_6_24
Type: TC
Location: 29474 - 30430 (+)
Type: TC
Location: 29474 - 30430 (+)
Gene ID: HRGMv2_0552_6_25
Type: pfam
Location: 30439 - 31533 (+)
Type: pfam
Location: 30439 - 31533 (+)
Gene ID: HRGMv2_0552_6_26
Type: pfam
Location: 31757 - 32173 (-)
Type: pfam
Location: 31757 - 32173 (-)
Gene ID: HRGMv2_0552_6_27
Type: TC
Location: 33103 - 34560 (+)
Type: TC
Location: 33103 - 34560 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp934204655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.