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Cluster: HRGMv2_0551_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0551_18 HRGMv2_0551_18_1 747 2093 + 9.B.168.1.2
pfam HRGMv2_0551_18 HRGMv2_0551_18_2 2181 2795 + FAA_hydrolase
peptidase HRGMv2_0551_18 HRGMv2_0551_18_3 2819 6655 + C25.UPW
TC HRGMv2_0551_18 HRGMv2_0551_18_4 6746 7948 + 1.B.57.4.6
pfam HRGMv2_0551_18 HRGMv2_0551_18_5 7976 8470 + YgbB
CAZyme HRGMv2_0551_18 HRGMv2_0551_18_6 9296 11932 + GH77
TC HRGMv2_0551_18 HRGMv2_0551_18_7 11948 13402 + 2.A.66.2.23
CAZyme HRGMv2_0551_18 HRGMv2_0551_18_8 13399 14337 + GT2
CAZyme HRGMv2_0551_18 HRGMv2_0551_18_9 14356 15282 + GT14
Gene ID: HRGMv2_0551_18_1
Type: TC
Location: 747 - 2093 (+)
Gene ID: HRGMv2_0551_18_2
Type: pfam
Location: 2181 - 2795 (+)
Gene ID: HRGMv2_0551_18_3
Type: peptidase
Location: 2819 - 6655 (+)
Gene ID: HRGMv2_0551_18_4
Type: TC
Location: 6746 - 7948 (+)
Gene ID: HRGMv2_0551_18_5
Type: pfam
Location: 7976 - 8470 (+)
Gene ID: HRGMv2_0551_18_6
Type: CAZyme
Location: 9296 - 11932 (+)
Gene ID: HRGMv2_0551_18_7
Type: TC
Location: 11948 - 13402 (+)
Gene ID: HRGMv2_0551_18_8
Type: CAZyme
Location: 13399 - 14337 (+)
Gene ID: HRGMv2_0551_18_9
Type: CAZyme
Location: 14356 - 15282 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Alloprevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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