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Cluster: HRGMv2_0551_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0551_8 HRGMv2_0551_8_5 4789 6021 - 9.B.156.3.1
pfam HRGMv2_0551_8 HRGMv2_0551_8_6 6119 6373 - Ribosomal_S20p
CAZyme HRGMv2_0551_8 HRGMv2_0551_8_7 6808 9258 + GH2
CAZyme HRGMv2_0551_8 HRGMv2_0551_8_8 9374 10459 + GH53
CAZyme HRGMv2_0551_8 HRGMv2_0551_8_9 10505 11614 + GH53
NULL(UNKNOWN) HRGMv2_0551_8 HRGMv2_0551_8_10 12167 12430 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0551_8 HRGMv2_0551_8_11 12584 12985 + HIT | DcpS_C
CAZyme HRGMv2_0551_8 HRGMv2_0551_8_12 13023 15551 + GH95
CAZyme HRGMv2_0551_8 HRGMv2_0551_8_13 15729 17651 + GH35
CAZyme HRGMv2_0551_8 HRGMv2_0551_8_14 17814 18722 + GT2
Gene ID: HRGMv2_0551_8_5
Type: TC
Location: 4789 - 6021 (-)
Gene ID: HRGMv2_0551_8_6
Type: pfam
Location: 6119 - 6373 (-)
Gene ID: HRGMv2_0551_8_7
Type: CAZyme
Location: 6808 - 9258 (+)
Gene ID: HRGMv2_0551_8_8
Type: CAZyme
Location: 9374 - 10459 (+)
Gene ID: HRGMv2_0551_8_9
Type: CAZyme
Location: 10505 - 11614 (+)
Gene ID: HRGMv2_0551_8_10
Type:
Location: 12167 - 12430 (-)
Gene ID: HRGMv2_0551_8_11
Type: pfam
Location: 12584 - 12985 (+)
Gene ID: HRGMv2_0551_8_12
Type: CAZyme
Location: 13023 - 15551 (+)
Gene ID: HRGMv2_0551_8_13
Type: CAZyme
Location: 15729 - 17651 (+)
Gene ID: HRGMv2_0551_8_14
Type: CAZyme
Location: 17814 - 18722 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Alloprevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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