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Cluster: HRGMv2_0551_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0551_2 HRGMv2_0551_2_13 17534 20323 + 1.B.14.12.1
pfam HRGMv2_0551_2 HRGMv2_0551_2_14 20416 21354 + Metallophos
CAZyme HRGMv2_0551_2 HRGMv2_0551_2_15 21540 25049 - GH20
TC HRGMv2_0551_2 HRGMv2_0551_2_16 25769 26806 + 2.A.6.2.4
TC HRGMv2_0551_2 HRGMv2_0551_2_17 26841 29978 + 2.A.6.2.17
NULL(UNKNOWN) HRGMv2_0551_2 HRGMv2_0551_2_18 30491 31144 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_0551_2 HRGMv2_0551_2_19 31147 31431 + HTH_5
CAZyme HRGMv2_0551_2 HRGMv2_0551_2_20 31757 33883 + GH2
NULL(UNKNOWN) HRGMv2_0551_2 HRGMv2_0551_2_21 34009 34245 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0551_2 HRGMv2_0551_2_22 34483 37596 + 1.B.14.6.1
Gene ID: HRGMv2_0551_2_13
Type: TC
Location: 17534 - 20323 (+)
Gene ID: HRGMv2_0551_2_14
Type: pfam
Location: 20416 - 21354 (+)
Gene ID: HRGMv2_0551_2_15
Type: CAZyme
Location: 21540 - 25049 (-)
Gene ID: HRGMv2_0551_2_16
Type: TC
Location: 25769 - 26806 (+)
Gene ID: HRGMv2_0551_2_17
Type: TC
Location: 26841 - 29978 (+)
Gene ID: HRGMv2_0551_2_18
Type:
Location: 30491 - 31144 (+)
Gene ID: HRGMv2_0551_2_19
Type: TF
Location: 31147 - 31431 (+)
Gene ID: HRGMv2_0551_2_20
Type: CAZyme
Location: 31757 - 33883 (+)
Gene ID: HRGMv2_0551_2_21
Type:
Location: 34009 - 34245 (+)
Gene ID: HRGMv2_0551_2_22
Type: TC
Location: 34483 - 37596 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Alloprevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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