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Cluster: HRGMv2_0551_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0551_1 HRGMv2_0551_1_19 24096 25928 + GH13_46
NULL(UNKNOWN) HRGMv2_0551_1 HRGMv2_0551_1_20 27205 27408 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0551_1 HRGMv2_0551_1_21 27938 30112 + GH97
TC HRGMv2_0551_1 HRGMv2_0551_1_22 30235 33306 + 1.B.14.6.1
TC HRGMv2_0551_1 HRGMv2_0551_1_23 33340 35016 + 8.A.46.1.1
pfam HRGMv2_0551_1 HRGMv2_0551_1_24 35056 36237 + SusE | SusF_SusE
pfam HRGMv2_0551_1 HRGMv2_0551_1_25 36346 37767 + SusF_SusE | SusF_N
CAZyme HRGMv2_0551_1 HRGMv2_0551_1_26 37965 39383 + GH13_6
Gene ID: HRGMv2_0551_1_19
Type: CAZyme
Location: 24096 - 25928 (+)
Gene ID: HRGMv2_0551_1_20
Type:
Location: 27205 - 27408 (-)
Gene ID: HRGMv2_0551_1_21
Type: CAZyme
Location: 27938 - 30112 (+)
Gene ID: HRGMv2_0551_1_22
Type: TC
Location: 30235 - 33306 (+)
Gene ID: HRGMv2_0551_1_23
Type: TC
Location: 33340 - 35016 (+)
Gene ID: HRGMv2_0551_1_24
Type: pfam
Location: 35056 - 36237 (+)
Gene ID: HRGMv2_0551_1_25
Type: pfam
Location: 36346 - 37767 (+)
Gene ID: HRGMv2_0551_1_26
Type: CAZyme
Location: 37965 - 39383 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Alloprevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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