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Cluster: HRGMv2_0545_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0545_14 HRGMv2_0545_14_8 5774 8080 + GH31
pfam HRGMv2_0545_14 HRGMv2_0545_14_9 8204 9553 - AAA_14 | DUF4143
TC HRGMv2_0545_14 HRGMv2_0545_14_10 9712 10659 - 2.A.4.7.9
NULL(UNKNOWN) HRGMv2_0545_14 HRGMv2_0545_14_11 11036 11224 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0545_14 HRGMv2_0545_14_12 11448 11702 + Ribosomal_S20p
TC HRGMv2_0545_14 HRGMv2_0545_14_13 11663 13345 + 3.D.10.1.4
TC HRGMv2_0545_14 HRGMv2_0545_14_14 13393 15039 + 9.B.174.1.1
pfam HRGMv2_0545_14 HRGMv2_0545_14_15 15036 18407 + DEAD | Helicase_C | CarD_TRCF_RID | TRCF | ResIII | UvrB_inter
TC HRGMv2_0545_14 HRGMv2_0545_14_16 18388 18831 - 1.A.22.1.1
Gene ID: HRGMv2_0545_14_8
Type: CAZyme
Location: 5774 - 8080 (+)
Gene ID: HRGMv2_0545_14_9
Type: pfam
Location: 8204 - 9553 (-)
Gene ID: HRGMv2_0545_14_10
Type: TC
Location: 9712 - 10659 (-)
Gene ID: HRGMv2_0545_14_11
Type:
Location: 11036 - 11224 (+)
Gene ID: HRGMv2_0545_14_12
Type: pfam
Location: 11448 - 11702 (+)
Gene ID: HRGMv2_0545_14_13
Type: TC
Location: 11663 - 13345 (+)
Gene ID: HRGMv2_0545_14_14
Type: TC
Location: 13393 - 15039 (+)
Gene ID: HRGMv2_0545_14_15
Type: pfam
Location: 15036 - 18407 (+)
Gene ID: HRGMv2_0545_14_16
Type: TC
Location: 18388 - 18831 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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