Cluster: HRGMv2_0545_CGC38
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0545
- CGC Family ID: CGCFAM_00998
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0545_85 | HRGMv2_0545_85_20 | 20516 | 23125 | - | 1.B.14.6.1 |
| STP | HRGMv2_0545_85 | HRGMv2_0545_85_21 | 23350 | 23940 | + | Sigma70_r2 | Sigma70_r4_2 |
| STP | HRGMv2_0545_85 | HRGMv2_0545_85_22 | 23946 | 24965 | + | FecR |
| CAZyme | HRGMv2_0545_85 | HRGMv2_0545_85_23 | 25017 | 26012 | + | GH43_34 |
| pfam | HRGMv2_0545_85 | HRGMv2_0545_85_24 | 26117 | 26581 | - | DDE_Tnp_1 | DDE_Tnp_1_3 |
| NULL(UNKNOWN) | HRGMv2_0545_85 | HRGMv2_0545_85_25 | 26582 | 27004 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0545_85 | HRGMv2_0545_85_26 | 27079 | 28263 | - | GH3 |
Gene ID: HRGMv2_0545_85_20
Type: TC
Location: 20516 - 23125 (-)
Type: TC
Location: 20516 - 23125 (-)
Gene ID: HRGMv2_0545_85_21
Type: STP
Location: 23350 - 23940 (+)
Type: STP
Location: 23350 - 23940 (+)
Gene ID: HRGMv2_0545_85_22
Type: STP
Location: 23946 - 24965 (+)
Type: STP
Location: 23946 - 24965 (+)
Gene ID: HRGMv2_0545_85_23
Type: CAZyme
Location: 25017 - 26012 (+)
Type: CAZyme
Location: 25017 - 26012 (+)
Gene ID: HRGMv2_0545_85_24
Type: pfam
Location: 26117 - 26581 (-)
Type: pfam
Location: 26117 - 26581 (-)
Gene ID: HRGMv2_0545_85_25
Type:
Location: 26582 - 27004 (-)
Type:
Location: 26582 - 27004 (-)
Gene ID: HRGMv2_0545_85_26
Type: CAZyme
Location: 27079 - 28263 (-)
Type: CAZyme
Location: 27079 - 28263 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Species
Lepagella sp019416425
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.