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Cluster: HRGMv2_0545_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0545_72 HRGMv2_0545_72_9 11010 12440 - GH105
CAZyme HRGMv2_0545_72 HRGMv2_0545_72_10 12453 14294 - PL11_1
pfam HRGMv2_0545_72 HRGMv2_0545_72_11 14464 16536 - SusD_RagB | SusD-like_3
TC HRGMv2_0545_72 HRGMv2_0545_72_12 16573 19704 - 1.B.14.6.1
TF HRGMv2_0545_72 HRGMv2_0545_72_13 19856 22744 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_0545_72 HRGMv2_0545_72_14 22772 24823 - GH2
NULL(UNKNOWN) HRGMv2_0545_72 HRGMv2_0545_72_15 24860 25282 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0545_72 HRGMv2_0545_72_16 25307 26116 - Aldolase_II
TC HRGMv2_0545_72 HRGMv2_0545_72_17 26152 27189 - 2.A.7.6.1
Gene ID: HRGMv2_0545_72_9
Type: CAZyme
Location: 11010 - 12440 (-)
Gene ID: HRGMv2_0545_72_10
Type: CAZyme
Location: 12453 - 14294 (-)
Gene ID: HRGMv2_0545_72_11
Type: pfam
Location: 14464 - 16536 (-)
Gene ID: HRGMv2_0545_72_12
Type: TC
Location: 16573 - 19704 (-)
Gene ID: HRGMv2_0545_72_13
Type: TF
Location: 19856 - 22744 (-)
Gene ID: HRGMv2_0545_72_14
Type: CAZyme
Location: 22772 - 24823 (-)
Gene ID: HRGMv2_0545_72_15
Type:
Location: 24860 - 25282 (-)
Gene ID: HRGMv2_0545_72_16
Type: pfam
Location: 25307 - 26116 (-)
Gene ID: HRGMv2_0545_72_17
Type: TC
Location: 26152 - 27189 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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