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Cluster: HRGMv2_0545_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0545_53 HRGMv2_0545_53_3 1888 3108 - GT4
TC HRGMv2_0545_53 HRGMv2_0545_53_4 3410 6184 - 3.A.12.1.1
NULL(UNKNOWN) HRGMv2_0545_53 HRGMv2_0545_53_5 6419 6604 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0545_53 HRGMv2_0545_53_6 6625 8514 + Transketolase_N | Transket_pyr | Transketolase_C | DXP_synthase_N
TC HRGMv2_0545_53 HRGMv2_0545_53_7 8511 9848 + 2.A.38.1.1
TC HRGMv2_0545_53 HRGMv2_0545_53_8 9859 11346 + 2.A.38.1.1
TC HRGMv2_0545_53 HRGMv2_0545_53_9 11421 12917 + 9.B.145.1.2
Gene ID: HRGMv2_0545_53_3
Type: CAZyme
Location: 1888 - 3108 (-)
Gene ID: HRGMv2_0545_53_4
Type: TC
Location: 3410 - 6184 (-)
Gene ID: HRGMv2_0545_53_5
Type:
Location: 6419 - 6604 (+)
Gene ID: HRGMv2_0545_53_6
Type: pfam
Location: 6625 - 8514 (+)
Gene ID: HRGMv2_0545_53_7
Type: TC
Location: 8511 - 9848 (+)
Gene ID: HRGMv2_0545_53_8
Type: TC
Location: 9859 - 11346 (+)
Gene ID: HRGMv2_0545_53_9
Type: TC
Location: 11421 - 12917 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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