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Cluster: HRGMv2_0545_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0545_48 HRGMv2_0545_48_10 6501 8048 + GH53
TF HRGMv2_0545_48 HRGMv2_0545_48_11 8246 12172 + HTH_AraC
TC HRGMv2_0545_48 HRGMv2_0545_48_12 12388 15357 + 1.B.14.6.1
TC HRGMv2_0545_48 HRGMv2_0545_48_13 15368 16981 + 8.A.46.1.1
pfam HRGMv2_0545_48 HRGMv2_0545_48_14 16991 18700 + SusE | DUF5111 | DUF5114
CAZyme HRGMv2_0545_48 HRGMv2_0545_48_15 18712 19773 + GH53
CAZyme HRGMv2_0545_48 HRGMv2_0545_48_16 19779 22208 + GH2
Gene ID: HRGMv2_0545_48_10
Type: CAZyme
Location: 6501 - 8048 (+)
Gene ID: HRGMv2_0545_48_11
Type: TF
Location: 8246 - 12172 (+)
Gene ID: HRGMv2_0545_48_12
Type: TC
Location: 12388 - 15357 (+)
Gene ID: HRGMv2_0545_48_13
Type: TC
Location: 15368 - 16981 (+)
Gene ID: HRGMv2_0545_48_14
Type: pfam
Location: 16991 - 18700 (+)
Gene ID: HRGMv2_0545_48_15
Type: CAZyme
Location: 18712 - 19773 (+)
Gene ID: HRGMv2_0545_48_16
Type: CAZyme
Location: 19779 - 22208 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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