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Cluster: HRGMv2_0545_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0545_38 HRGMv2_0545_38_15 20566 23733 - 1.B.14.6.1
CAZyme HRGMv2_0545_38 HRGMv2_0545_38_16 23749 25209 - GH76
pfam HRGMv2_0545_38 HRGMv2_0545_38_17 25226 27046 - CarboxypepD_reg | CarboxypepD_reg | CarbopepD_reg_2 | CarbopepD_reg_2
NULL(UNKNOWN) HRGMv2_0545_38 HRGMv2_0545_38_18 27048 27281 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0545_38 HRGMv2_0545_38_19 27341 29659 + GH92
CAZyme HRGMv2_0545_38 HRGMv2_0545_38_20 29769 32312 - CBM67 | GH78
sulfatase HRGMv2_0545_38 HRGMv2_0545_38_21 32354 34804 - S1_4
TF HRGMv2_0545_38 HRGMv2_0545_38_22 35044 39123 + HTH_AraC
CAZyme HRGMv2_0545_38 HRGMv2_0545_38_23 39251 40717 + GH125
pfam HRGMv2_0545_38 HRGMv2_0545_38_24 40740 41675 + Exo_endo_phos
CAZyme HRGMv2_0545_38 HRGMv2_0545_38_25 41760 42743 + GH43_34
Gene ID: HRGMv2_0545_38_15
Type: TC
Location: 20566 - 23733 (-)
Gene ID: HRGMv2_0545_38_16
Type: CAZyme
Location: 23749 - 25209 (-)
Gene ID: HRGMv2_0545_38_17
Type: pfam
Location: 25226 - 27046 (-)
Gene ID: HRGMv2_0545_38_18
Type:
Location: 27048 - 27281 (-)
Gene ID: HRGMv2_0545_38_19
Type: CAZyme
Location: 27341 - 29659 (+)
Gene ID: HRGMv2_0545_38_20
Type: CAZyme
Location: 29769 - 32312 (-)
Gene ID: HRGMv2_0545_38_21
Type: sulfatase
Location: 32354 - 34804 (-)
Gene ID: HRGMv2_0545_38_22
Type: TF
Location: 35044 - 39123 (+)
Gene ID: HRGMv2_0545_38_23
Type: CAZyme
Location: 39251 - 40717 (+)
Gene ID: HRGMv2_0545_38_24
Type: pfam
Location: 40740 - 41675 (+)
Gene ID: HRGMv2_0545_38_25
Type: CAZyme
Location: 41760 - 42743 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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