Cluster: HRGMv2_0542_CGC28
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0542
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0542_57 | HRGMv2_0542_57_1 | 1 | 879 | - | GH3 |
| pfam | HRGMv2_0542_57 | HRGMv2_0542_57_2 | 1084 | 2361 | - | TIG |
| TC | HRGMv2_0542_57 | HRGMv2_0542_57_3 | 2383 | 4056 | - | 8.A.46.2.2 |
| TC | HRGMv2_0542_57 | HRGMv2_0542_57_4 | 4084 | 7269 | - | 1.B.14.6.2 |
| CAZyme | HRGMv2_0542_57 | HRGMv2_0542_57_5 | 7285 | 8262 | - | GH16_3 |
| STP | HRGMv2_0542_57 | HRGMv2_0542_57_6 | 8639 | 9211 | + | Pribosyltran |
| TC | HRGMv2_0542_57 | HRGMv2_0542_57_7 | 9215 | 10561 | + | 2.A.40.4.2 |
| STP | HRGMv2_0542_57 | HRGMv2_0542_57_8 | 10576 | 10950 | + | Rhodanese |
| NULL(UNKNOWN) | HRGMv2_0542_57 | HRGMv2_0542_57_9 | 11079 | 11234 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0542_57 | HRGMv2_0542_57_10 | 11845 | 13368 | + | 3.A.1.3.17 |
| TC | HRGMv2_0542_57 | HRGMv2_0542_57_11 | 13355 | 14098 | + | 3.A.1.3.15 |
| pfam | HRGMv2_0542_57 | HRGMv2_0542_57_12 | 14356 | 16149 | + | MAM |
| TF | HRGMv2_0542_57 | HRGMv2_0542_57_13 | 16212 | 16811 | - | Trans_reg_C |
| TC | HRGMv2_0542_57 | HRGMv2_0542_57_14 | 16815 | 17915 | - | 2.A.4.7.9 |
Gene ID: HRGMv2_0542_57_1
Type: CAZyme
Location: 1 - 879 (-)
Type: CAZyme
Location: 1 - 879 (-)
Gene ID: HRGMv2_0542_57_2
Type: pfam
Location: 1084 - 2361 (-)
Type: pfam
Location: 1084 - 2361 (-)
Gene ID: HRGMv2_0542_57_3
Type: TC
Location: 2383 - 4056 (-)
Type: TC
Location: 2383 - 4056 (-)
Gene ID: HRGMv2_0542_57_4
Type: TC
Location: 4084 - 7269 (-)
Type: TC
Location: 4084 - 7269 (-)
Gene ID: HRGMv2_0542_57_5
Type: CAZyme
Location: 7285 - 8262 (-)
Type: CAZyme
Location: 7285 - 8262 (-)
Gene ID: HRGMv2_0542_57_6
Type: STP
Location: 8639 - 9211 (+)
Type: STP
Location: 8639 - 9211 (+)
Gene ID: HRGMv2_0542_57_7
Type: TC
Location: 9215 - 10561 (+)
Type: TC
Location: 9215 - 10561 (+)
Gene ID: HRGMv2_0542_57_8
Type: STP
Location: 10576 - 10950 (+)
Type: STP
Location: 10576 - 10950 (+)
Gene ID: HRGMv2_0542_57_9
Type:
Location: 11079 - 11234 (-)
Type:
Location: 11079 - 11234 (-)
Gene ID: HRGMv2_0542_57_10
Type: TC
Location: 11845 - 13368 (+)
Type: TC
Location: 11845 - 13368 (+)
Gene ID: HRGMv2_0542_57_11
Type: TC
Location: 13355 - 14098 (+)
Type: TC
Location: 13355 - 14098 (+)
Gene ID: HRGMv2_0542_57_12
Type: pfam
Location: 14356 - 16149 (+)
Type: pfam
Location: 14356 - 16149 (+)
Gene ID: HRGMv2_0542_57_13
Type: TF
Location: 16212 - 16811 (-)
Type: TF
Location: 16212 - 16811 (-)
Gene ID: HRGMv2_0542_57_14
Type: TC
Location: 16815 - 17915 (-)
Type: TC
Location: 16815 - 17915 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.