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Cluster: HRGMv2_0541_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0541_32 HRGMv2_0541_32_11 10842 11498 - 1.C.113.1.4
pfam HRGMv2_0541_32 HRGMv2_0541_32_12 11645 12730 - tRNA-synt_1b
NULL(UNKNOWN) HRGMv2_0541_32 HRGMv2_0541_32_13 12806 13489 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0541_32 HRGMv2_0541_32_14 13529 14785 - GT30
pfam HRGMv2_0541_32 HRGMv2_0541_32_15 14944 16461 - tRNA-synt_1c | Anticodon_2
STP HRGMv2_0541_32 HRGMv2_0541_32_16 16640 18700 + HD
TC HRGMv2_0541_32 HRGMv2_0541_32_17 18968 19825 - 1.A.30.1.4
pfam HRGMv2_0541_32 HRGMv2_0541_32_18 20034 20573 - Lysine_decarbox | LDcluster4
TC HRGMv2_0541_32 HRGMv2_0541_32_19 20629 23490 - 3.A.3.2.14
CAZyme HRGMv2_0541_32 HRGMv2_0541_32_20 23516 24289 - GT2
CAZyme HRGMv2_0541_32 HRGMv2_0541_32_21 24357 25631 - GT4
Gene ID: HRGMv2_0541_32_11
Type: TC
Location: 10842 - 11498 (-)
Gene ID: HRGMv2_0541_32_12
Type: pfam
Location: 11645 - 12730 (-)
Gene ID: HRGMv2_0541_32_13
Type:
Location: 12806 - 13489 (-)
Gene ID: HRGMv2_0541_32_14
Type: CAZyme
Location: 13529 - 14785 (-)
Gene ID: HRGMv2_0541_32_15
Type: pfam
Location: 14944 - 16461 (-)
Gene ID: HRGMv2_0541_32_16
Type: STP
Location: 16640 - 18700 (+)
Gene ID: HRGMv2_0541_32_17
Type: TC
Location: 18968 - 19825 (-)
Gene ID: HRGMv2_0541_32_18
Type: pfam
Location: 20034 - 20573 (-)
Gene ID: HRGMv2_0541_32_19
Type: TC
Location: 20629 - 23490 (-)
Gene ID: HRGMv2_0541_32_20
Type: CAZyme
Location: 23516 - 24289 (-)
Gene ID: HRGMv2_0541_32_21
Type: CAZyme
Location: 24357 - 25631 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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