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Cluster: HRGMv2_0541_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0541_17 HRGMv2_0541_17_5 3709 4641 - GH43_1
CAZyme HRGMv2_0541_17 HRGMv2_0541_17_6 4787 5923 - GH10
TC HRGMv2_0541_17 HRGMv2_0541_17_7 5943 7346 - 2.A.2.3.2
pfam HRGMv2_0541_17 HRGMv2_0541_17_8 7445 8743 - Lipase_GDSL | Lipase_GDSL_2
TF HRGMv2_0541_17 HRGMv2_0541_17_9 8937 12827 + HTH_AraC
CAZyme HRGMv2_0541_17 HRGMv2_0541_17_10 12903 14810 + GH67
CAZyme HRGMv2_0541_17 HRGMv2_0541_17_11 14848 16503 + GH35
TC HRGMv2_0541_17 HRGMv2_0541_17_12 16749 19898 + 1.B.14.6.1
pfam HRGMv2_0541_17 HRGMv2_0541_17_13 19942 21657 + SusD_RagB | SusD-like_3
pfam HRGMv2_0541_17 HRGMv2_0541_17_14 21780 23183 + SGBP_B_XBD
CAZyme HRGMv2_0541_17 HRGMv2_0541_17_15 23252 25675 + CBM4 | GH10
Gene ID: HRGMv2_0541_17_5
Type: CAZyme
Location: 3709 - 4641 (-)
Gene ID: HRGMv2_0541_17_6
Type: CAZyme
Location: 4787 - 5923 (-)
Gene ID: HRGMv2_0541_17_7
Type: TC
Location: 5943 - 7346 (-)
Gene ID: HRGMv2_0541_17_8
Type: pfam
Location: 7445 - 8743 (-)
Gene ID: HRGMv2_0541_17_9
Type: TF
Location: 8937 - 12827 (+)
Gene ID: HRGMv2_0541_17_10
Type: CAZyme
Location: 12903 - 14810 (+)
Gene ID: HRGMv2_0541_17_11
Type: CAZyme
Location: 14848 - 16503 (+)
Gene ID: HRGMv2_0541_17_12
Type: TC
Location: 16749 - 19898 (+)
Gene ID: HRGMv2_0541_17_13
Type: pfam
Location: 19942 - 21657 (+)
Gene ID: HRGMv2_0541_17_14
Type: pfam
Location: 21780 - 23183 (+)
Gene ID: HRGMv2_0541_17_15
Type: CAZyme
Location: 23252 - 25675 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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