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Cluster: HRGMv2_0541_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0541_16 HRGMv2_0541_16_21 21479 22297 + GT2
NULL(UNKNOWN) HRGMv2_0541_16 HRGMv2_0541_16_22 22314 22427 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0541_16 HRGMv2_0541_16_23 22686 23807 + 9.B.146.1.4
CAZyme HRGMv2_0541_16 HRGMv2_0541_16_24 23837 24730 + GT2
pfam HRGMv2_0541_16 HRGMv2_0541_16_25 24772 26025 - UDPG_MGDP_dh | NAD_Gly3P_dh_N | 3HCDH_N | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
TC HRGMv2_0541_16 HRGMv2_0541_16_26 26395 26796 + 9.B.18.1.3
TC HRGMv2_0541_16 HRGMv2_0541_16_27 26827 27495 + 9.B.18.1.3
Gene ID: HRGMv2_0541_16_21
Type: CAZyme
Location: 21479 - 22297 (+)
Gene ID: HRGMv2_0541_16_22
Type:
Location: 22314 - 22427 (+)
Gene ID: HRGMv2_0541_16_23
Type: TC
Location: 22686 - 23807 (+)
Gene ID: HRGMv2_0541_16_24
Type: CAZyme
Location: 23837 - 24730 (+)
Gene ID: HRGMv2_0541_16_25
Type: pfam
Location: 24772 - 26025 (-)
Gene ID: HRGMv2_0541_16_26
Type: TC
Location: 26395 - 26796 (+)
Gene ID: HRGMv2_0541_16_27
Type: TC
Location: 26827 - 27495 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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