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Cluster: HRGMv2_0538_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0538_28 HRGMv2_0538_28_1 3 500 + GH27
pfam HRGMv2_0538_28 HRGMv2_0538_28_2 680 1237 + VitK2_biosynth
TC HRGMv2_0538_28 HRGMv2_0538_28_3 1306 2289 + 1.A.35.1.2
TF HRGMv2_0538_28 HRGMv2_0538_28_4 2361 6293 - HTH_AraC
TC HRGMv2_0538_28 HRGMv2_0538_28_5 6538 9684 + 1.B.14.6.1
pfam HRGMv2_0538_28 HRGMv2_0538_28_6 9697 11352 + SusD_RagB | SusD-like_3
pfam HRGMv2_0538_28 HRGMv2_0538_28_7 11388 12557 + SusE
CAZyme HRGMv2_0538_28 HRGMv2_0538_28_8 12570 13826 + GH76
pfam HRGMv2_0538_28 HRGMv2_0538_28_9 13868 15031 + SusE
CAZyme HRGMv2_0538_28 HRGMv2_0538_28_10 15133 18126 + GH115
pfam HRGMv2_0538_28 HRGMv2_0538_28_11 18138 20513 + SusE | SusE
CAZyme HRGMv2_0538_28 HRGMv2_0538_28_12 20515 22239 + GH43_3
Gene ID: HRGMv2_0538_28_1
Type: CAZyme
Location: 3 - 500 (+)
Gene ID: HRGMv2_0538_28_2
Type: pfam
Location: 680 - 1237 (+)
Gene ID: HRGMv2_0538_28_3
Type: TC
Location: 1306 - 2289 (+)
Gene ID: HRGMv2_0538_28_4
Type: TF
Location: 2361 - 6293 (-)
Gene ID: HRGMv2_0538_28_5
Type: TC
Location: 6538 - 9684 (+)
Gene ID: HRGMv2_0538_28_6
Type: pfam
Location: 9697 - 11352 (+)
Gene ID: HRGMv2_0538_28_7
Type: pfam
Location: 11388 - 12557 (+)
Gene ID: HRGMv2_0538_28_8
Type: CAZyme
Location: 12570 - 13826 (+)
Gene ID: HRGMv2_0538_28_9
Type: pfam
Location: 13868 - 15031 (+)
Gene ID: HRGMv2_0538_28_10
Type: CAZyme
Location: 15133 - 18126 (+)
Gene ID: HRGMv2_0538_28_11
Type: pfam
Location: 18138 - 20513 (+)
Gene ID: HRGMv2_0538_28_12
Type: CAZyme
Location: 20515 - 22239 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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