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Cluster: HRGMv2_0538_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0538_23 HRGMv2_0538_23_10 10895 12517 - GH27
pfam HRGMv2_0538_23 HRGMv2_0538_23_11 12544 13866 - F5_F8_type_C | BT_3987-like_N | BT_3987-like_N
pfam HRGMv2_0538_23 HRGMv2_0538_23_12 13888 15774 - SusD_RagB | SusD-like_3
TC HRGMv2_0538_23 HRGMv2_0538_23_13 15794 19159 - 1.B.14.6.1
STP HRGMv2_0538_23 HRGMv2_0538_23_14 19200 20165 - FecR
TF HRGMv2_0538_23 HRGMv2_0538_23_15 20282 20878 - GerE
TC HRGMv2_0538_23 HRGMv2_0538_23_16 21032 21910 + 2.A.28.1.8
TC HRGMv2_0538_23 HRGMv2_0538_23_17 21928 24309 + 1.B.14.6.5
TC HRGMv2_0538_23 HRGMv2_0538_23_18 24306 25778 - 2.A.3.7.1
TF HRGMv2_0538_23 HRGMv2_0538_23_19 26292 26822 + GerE
STP HRGMv2_0538_23 HRGMv2_0538_23_20 26947 27945 + FecR
TC HRGMv2_0538_23 HRGMv2_0538_23_21 28175 31780 + 1.B.14.6.2
Gene ID: HRGMv2_0538_23_10
Type: CAZyme
Location: 10895 - 12517 (-)
Gene ID: HRGMv2_0538_23_11
Type: pfam
Location: 12544 - 13866 (-)
Gene ID: HRGMv2_0538_23_12
Type: pfam
Location: 13888 - 15774 (-)
Gene ID: HRGMv2_0538_23_13
Type: TC
Location: 15794 - 19159 (-)
Gene ID: HRGMv2_0538_23_14
Type: STP
Location: 19200 - 20165 (-)
Gene ID: HRGMv2_0538_23_15
Type: TF
Location: 20282 - 20878 (-)
Gene ID: HRGMv2_0538_23_16
Type: TC
Location: 21032 - 21910 (+)
Gene ID: HRGMv2_0538_23_17
Type: TC
Location: 21928 - 24309 (+)
Gene ID: HRGMv2_0538_23_18
Type: TC
Location: 24306 - 25778 (-)
Gene ID: HRGMv2_0538_23_19
Type: TF
Location: 26292 - 26822 (+)
Gene ID: HRGMv2_0538_23_20
Type: STP
Location: 26947 - 27945 (+)
Gene ID: HRGMv2_0538_23_21
Type: TC
Location: 28175 - 31780 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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