Cluster: HRGMv2_0536_CGC5
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0536
- CGC Family ID: CGCFAM_00003
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0536_9 | HRGMv2_0536_9_39 | 53896 | 54981 | + | GT2 |
| pfam | HRGMv2_0536_9 | HRGMv2_0536_9_40 | 55143 | 56342 | + | Shikimate_DH | Sacchrp_dh_NADP | Sacchrp_dh_C |
| NULL(UNKNOWN) | HRGMv2_0536_9 | HRGMv2_0536_9_41 | 57083 | 57199 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0536_9 | HRGMv2_0536_9_42 | 57287 | 60403 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0536_9 | HRGMv2_0536_9_43 | 60437 | 61873 | + | SusD_RagB |
| NULL(UNKNOWN) | HRGMv2_0536_9 | HRGMv2_0536_9_44 | 62375 | 63706 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0536_9 | HRGMv2_0536_9_45 | 63728 | 64720 | + | GT2 |
| CAZyme | HRGMv2_0536_9 | HRGMv2_0536_9_46 | 64713 | 65705 | + | GT2 |
| CAZyme | HRGMv2_0536_9 | HRGMv2_0536_9_47 | 65709 | 66710 | + | GT2 |
| pfam | HRGMv2_0536_9 | HRGMv2_0536_9_48 | 66712 | 67905 | + | EpsG |
| pfam | HRGMv2_0536_9 | HRGMv2_0536_9_49 | 67830 | 68813 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| CAZyme | HRGMv2_0536_9 | HRGMv2_0536_9_50 | 68810 | 69643 | - | GT2 |
Gene ID: HRGMv2_0536_9_39
Type: CAZyme
Location: 53896 - 54981 (+)
Type: CAZyme
Location: 53896 - 54981 (+)
Gene ID: HRGMv2_0536_9_40
Type: pfam
Location: 55143 - 56342 (+)
Type: pfam
Location: 55143 - 56342 (+)
Gene ID: HRGMv2_0536_9_41
Type:
Location: 57083 - 57199 (+)
Type:
Location: 57083 - 57199 (+)
Gene ID: HRGMv2_0536_9_42
Type: TC
Location: 57287 - 60403 (+)
Type: TC
Location: 57287 - 60403 (+)
Gene ID: HRGMv2_0536_9_43
Type: pfam
Location: 60437 - 61873 (+)
Type: pfam
Location: 60437 - 61873 (+)
Gene ID: HRGMv2_0536_9_44
Type:
Location: 62375 - 63706 (+)
Type:
Location: 62375 - 63706 (+)
Gene ID: HRGMv2_0536_9_45
Type: CAZyme
Location: 63728 - 64720 (+)
Type: CAZyme
Location: 63728 - 64720 (+)
Gene ID: HRGMv2_0536_9_46
Type: CAZyme
Location: 64713 - 65705 (+)
Type: CAZyme
Location: 64713 - 65705 (+)
Gene ID: HRGMv2_0536_9_47
Type: CAZyme
Location: 65709 - 66710 (+)
Type: CAZyme
Location: 65709 - 66710 (+)
Gene ID: HRGMv2_0536_9_48
Type: pfam
Location: 66712 - 67905 (+)
Type: pfam
Location: 66712 - 67905 (+)
Gene ID: HRGMv2_0536_9_49
Type: pfam
Location: 67830 - 68813 (-)
Type: pfam
Location: 67830 - 68813 (-)
Gene ID: HRGMv2_0536_9_50
Type: CAZyme
Location: 68810 - 69643 (-)
Type: CAZyme
Location: 68810 - 69643 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas
Species
Porphyromonas sp947290775
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.