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Cluster: HRGMv2_0536_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0536_9 HRGMv2_0536_9_14 17710 18852 - GT28
TC HRGMv2_0536_9 HRGMv2_0536_9_15 18862 20160 - 2.A.103.1.2
pfam HRGMv2_0536_9 HRGMv2_0536_9_16 20169 21527 - Mur_ligase_C | Mur_ligase_M | MurD-like_N
NULL(UNKNOWN) HRGMv2_0536_9 HRGMv2_0536_9_17 22161 22658 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0536_9 HRGMv2_0536_9_18 22829 23863 + CBM50
NULL(UNKNOWN) HRGMv2_0536_9 HRGMv2_0536_9_19 24095 24910 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0536_9 HRGMv2_0536_9_20 25001 27436 + 1.B.14.6.7
Gene ID: HRGMv2_0536_9_14
Type: CAZyme
Location: 17710 - 18852 (-)
Gene ID: HRGMv2_0536_9_15
Type: TC
Location: 18862 - 20160 (-)
Gene ID: HRGMv2_0536_9_16
Type: pfam
Location: 20169 - 21527 (-)
Gene ID: HRGMv2_0536_9_17
Type:
Location: 22161 - 22658 (+)
Gene ID: HRGMv2_0536_9_18
Type: CAZyme
Location: 22829 - 23863 (+)
Gene ID: HRGMv2_0536_9_19
Type:
Location: 24095 - 24910 (-)
Gene ID: HRGMv2_0536_9_20
Type: TC
Location: 25001 - 27436 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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