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Cluster: HRGMv2_0525_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0525_3 HRGMv2_0525_3_3 1728 3485 + 3.A.2.3.3
TC HRGMv2_0525_3 HRGMv2_0525_3_4 3514 4833 + 3.A.2.3.3
pfam HRGMv2_0525_3 HRGMv2_0525_3_5 4853 5458 + ATP-synt_D
TC HRGMv2_0525_3 HRGMv2_0525_3_6 5455 7260 + 3.A.2.2.2
TC HRGMv2_0525_3 HRGMv2_0525_3_7 7292 7753 + 3.A.2.2.2
CAZyme HRGMv2_0525_3 HRGMv2_0525_3_8 8289 9959 + GT3
CAZyme HRGMv2_0525_3 HRGMv2_0525_3_9 9997 12564 + GT35
TC HRGMv2_0525_3 HRGMv2_0525_3_10 13337 16486 + 1.B.14.6.13
pfam HRGMv2_0525_3 HRGMv2_0525_3_11 16504 18468 + SusD-like | SusD-like | SusD-like_2 | SusD-like_2
CAZyme HRGMv2_0525_3 HRGMv2_0525_3_12 18852 20195 + GH29
CAZyme HRGMv2_0525_3 HRGMv2_0525_3_13 20220 22265 + CBM9
Gene ID: HRGMv2_0525_3_3
Type: TC
Location: 1728 - 3485 (+)
Gene ID: HRGMv2_0525_3_4
Type: TC
Location: 3514 - 4833 (+)
Gene ID: HRGMv2_0525_3_5
Type: pfam
Location: 4853 - 5458 (+)
Gene ID: HRGMv2_0525_3_6
Type: TC
Location: 5455 - 7260 (+)
Gene ID: HRGMv2_0525_3_7
Type: TC
Location: 7292 - 7753 (+)
Gene ID: HRGMv2_0525_3_8
Type: CAZyme
Location: 8289 - 9959 (+)
Gene ID: HRGMv2_0525_3_9
Type: CAZyme
Location: 9997 - 12564 (+)
Gene ID: HRGMv2_0525_3_10
Type: TC
Location: 13337 - 16486 (+)
Gene ID: HRGMv2_0525_3_11
Type: pfam
Location: 16504 - 18468 (+)
Gene ID: HRGMv2_0525_3_12
Type: CAZyme
Location: 18852 - 20195 (+)
Gene ID: HRGMv2_0525_3_13
Type: CAZyme
Location: 20220 - 22265 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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