Cluster: HRGMv2_0525_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0525
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0525_2 | HRGMv2_0525_2_92 | 94588 | 96531 | - | CBM62 |
| STP | HRGMv2_0525_2 | HRGMv2_0525_2_93 | 96740 | 97930 | - | Aminotran_1_2 |
| pfam | HRGMv2_0525_2 | HRGMv2_0525_2_94 | 98082 | 99035 | + | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| TC | HRGMv2_0525_2 | HRGMv2_0525_2_95 | 99156 | 102122 | - | 2.A.6.4.3 |
| pfam | HRGMv2_0525_2 | HRGMv2_0525_2_96 | 102404 | 103489 | - | Exo_endo_phos |
| TC | HRGMv2_0525_2 | HRGMv2_0525_2_97 | 103486 | 104379 | - | 9.B.104.1.2 |
Gene ID: HRGMv2_0525_2_92
Type: CAZyme
Location: 94588 - 96531 (-)
Type: CAZyme
Location: 94588 - 96531 (-)
Gene ID: HRGMv2_0525_2_93
Type: STP
Location: 96740 - 97930 (-)
Type: STP
Location: 96740 - 97930 (-)
Gene ID: HRGMv2_0525_2_94
Type: pfam
Location: 98082 - 99035 (+)
Type: pfam
Location: 98082 - 99035 (+)
Gene ID: HRGMv2_0525_2_95
Type: TC
Location: 99156 - 102122 (-)
Type: TC
Location: 99156 - 102122 (-)
Gene ID: HRGMv2_0525_2_96
Type: pfam
Location: 102404 - 103489 (-)
Type: pfam
Location: 102404 - 103489 (-)
Gene ID: HRGMv2_0525_2_97
Type: TC
Location: 103486 - 104379 (-)
Type: TC
Location: 103486 - 104379 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900546645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.