Cluster: HRGMv2_0525_CGC31
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate: xylan/beta-glucan
- Genome ID: HRGMv2_0525
- CGC Family ID: CGCFAM_00116
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0525_40 | HRGMv2_0525_40_12 | 13762 | 16902 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0525_40 | HRGMv2_0525_40_13 | 17338 | 19131 | - | GH10 |
| pfam | HRGMv2_0525_40 | HRGMv2_0525_40_14 | 19152 | 20186 | - | BT_3987-like_N | DUF5627 |
| pfam | HRGMv2_0525_40 | HRGMv2_0525_40_15 | 20219 | 22000 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0525_40 | HRGMv2_0525_40_16 | 22012 | 24882 | - | 1.B.14.6.1 |
| pfam | HRGMv2_0525_40 | HRGMv2_0525_40_17 | 24920 | 26875 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0525_40 | HRGMv2_0525_40_18 | 26888 | 30046 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0525_40_12
Type: TC
Location: 13762 - 16902 (-)
Type: TC
Location: 13762 - 16902 (-)
Gene ID: HRGMv2_0525_40_13
Type: CAZyme
Location: 17338 - 19131 (-)
Type: CAZyme
Location: 17338 - 19131 (-)
Gene ID: HRGMv2_0525_40_14
Type: pfam
Location: 19152 - 20186 (-)
Type: pfam
Location: 19152 - 20186 (-)
Gene ID: HRGMv2_0525_40_15
Type: pfam
Location: 20219 - 22000 (-)
Type: pfam
Location: 20219 - 22000 (-)
Gene ID: HRGMv2_0525_40_16
Type: TC
Location: 22012 - 24882 (-)
Type: TC
Location: 22012 - 24882 (-)
Gene ID: HRGMv2_0525_40_17
Type: pfam
Location: 24920 - 26875 (-)
Type: pfam
Location: 24920 - 26875 (-)
Gene ID: HRGMv2_0525_40_18
Type: TC
Location: 26888 - 30046 (-)
Type: TC
Location: 26888 - 30046 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900546645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.