Cluster: HRGMv2_0525_CGC20
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0525
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0525_12 | HRGMv2_0525_12_1 | 128 | 895 | - | 9.B.2.1.12 |
| NULL(UNKNOWN) | HRGMv2_0525_12 | HRGMv2_0525_12_2 | 979 | 1107 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0525_12 | HRGMv2_0525_12_3 | 1228 | 3342 | + | GH97 |
| TF | HRGMv2_0525_12 | HRGMv2_0525_12_4 | 3463 | 7659 | - | HTH_AraC |
| CAZyme | HRGMv2_0525_12 | HRGMv2_0525_12_5 | 7935 | 8921 | + | GH43_29 |
| CAZyme | HRGMv2_0525_12 | HRGMv2_0525_12_6 | 8967 | 10940 | + | GH51_2 |
Gene ID: HRGMv2_0525_12_1
Type: TC
Location: 128 - 895 (-)
Type: TC
Location: 128 - 895 (-)
Gene ID: HRGMv2_0525_12_2
Type:
Location: 979 - 1107 (+)
Type:
Location: 979 - 1107 (+)
Gene ID: HRGMv2_0525_12_3
Type: CAZyme
Location: 1228 - 3342 (+)
Type: CAZyme
Location: 1228 - 3342 (+)
Gene ID: HRGMv2_0525_12_4
Type: TF
Location: 3463 - 7659 (-)
Type: TF
Location: 3463 - 7659 (-)
Gene ID: HRGMv2_0525_12_5
Type: CAZyme
Location: 7935 - 8921 (+)
Type: CAZyme
Location: 7935 - 8921 (+)
Gene ID: HRGMv2_0525_12_6
Type: CAZyme
Location: 8967 - 10940 (+)
Type: CAZyme
Location: 8967 - 10940 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900546645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.