Cluster: HRGMv2_0525_CGC15
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 9
- Substrate:
- Genome ID: HRGMv2_0525
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0525_9 | HRGMv2_0525_9_1 | 255 | 2540 | - | GH92 |
| CAZyme | HRGMv2_0525_9 | HRGMv2_0525_9_2 | 2569 | 4851 | - | GH92 |
| STP | HRGMv2_0525_9 | HRGMv2_0525_9_3 | 4865 | 5857 | - | FecR |
| CAZyme | HRGMv2_0525_9 | HRGMv2_0525_9_4 | 5964 | 8174 | - | GH92 |
| TF | HRGMv2_0525_9 | HRGMv2_0525_9_5 | 8837 | 9370 | + | GerE |
| NULL(UNKNOWN) | HRGMv2_0525_9 | HRGMv2_0525_9_6 | 9293 | 9517 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0525_9 | HRGMv2_0525_9_7 | 9663 | 13073 | + | 1.B.14.6.2 |
| TC | HRGMv2_0525_9 | HRGMv2_0525_9_8 | 13095 | 14906 | + | 8.A.46.2.2 |
| pfam | HRGMv2_0525_9 | HRGMv2_0525_9_9 | 15114 | 15368 | + | Ribosomal_L31 |
| CAZyme | HRGMv2_0525_9 | HRGMv2_0525_9_10 | 15611 | 17269 | - | GH35 |
| CAZyme | HRGMv2_0525_9 | HRGMv2_0525_9_11 | 17245 | 17964 | - | GH35 |
| NULL(UNKNOWN) | HRGMv2_0525_9 | HRGMv2_0525_9_12 | 18026 | 18301 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0525_9 | HRGMv2_0525_9_13 | 18301 | 19653 | - | CBM6 | GH43_29 |
| CAZyme | HRGMv2_0525_9 | HRGMv2_0525_9_14 | 19660 | 20979 | - | CBM6 | GH43_29 |
| CAZyme | HRGMv2_0525_9 | HRGMv2_0525_9_15 | 21011 | 23107 | - | CBM91 | GH43_10 |
| CAZyme | HRGMv2_0525_9 | HRGMv2_0525_9_16 | 23120 | 25063 | - | GH97 |
Gene ID: HRGMv2_0525_9_1
Type: CAZyme
Location: 255 - 2540 (-)
Type: CAZyme
Location: 255 - 2540 (-)
Gene ID: HRGMv2_0525_9_2
Type: CAZyme
Location: 2569 - 4851 (-)
Type: CAZyme
Location: 2569 - 4851 (-)
Gene ID: HRGMv2_0525_9_3
Type: STP
Location: 4865 - 5857 (-)
Type: STP
Location: 4865 - 5857 (-)
Gene ID: HRGMv2_0525_9_4
Type: CAZyme
Location: 5964 - 8174 (-)
Type: CAZyme
Location: 5964 - 8174 (-)
Gene ID: HRGMv2_0525_9_5
Type: TF
Location: 8837 - 9370 (+)
Type: TF
Location: 8837 - 9370 (+)
Gene ID: HRGMv2_0525_9_6
Type:
Location: 9293 - 9517 (-)
Type:
Location: 9293 - 9517 (-)
Gene ID: HRGMv2_0525_9_7
Type: TC
Location: 9663 - 13073 (+)
Type: TC
Location: 9663 - 13073 (+)
Gene ID: HRGMv2_0525_9_8
Type: TC
Location: 13095 - 14906 (+)
Type: TC
Location: 13095 - 14906 (+)
Gene ID: HRGMv2_0525_9_9
Type: pfam
Location: 15114 - 15368 (+)
Type: pfam
Location: 15114 - 15368 (+)
Gene ID: HRGMv2_0525_9_10
Type: CAZyme
Location: 15611 - 17269 (-)
Type: CAZyme
Location: 15611 - 17269 (-)
Gene ID: HRGMv2_0525_9_11
Type: CAZyme
Location: 17245 - 17964 (-)
Type: CAZyme
Location: 17245 - 17964 (-)
Gene ID: HRGMv2_0525_9_12
Type:
Location: 18026 - 18301 (-)
Type:
Location: 18026 - 18301 (-)
Gene ID: HRGMv2_0525_9_13
Type: CAZyme
Location: 18301 - 19653 (-)
Type: CAZyme
Location: 18301 - 19653 (-)
Gene ID: HRGMv2_0525_9_14
Type: CAZyme
Location: 19660 - 20979 (-)
Type: CAZyme
Location: 19660 - 20979 (-)
Gene ID: HRGMv2_0525_9_15
Type: CAZyme
Location: 21011 - 23107 (-)
Type: CAZyme
Location: 21011 - 23107 (-)
Gene ID: HRGMv2_0525_9_16
Type: CAZyme
Location: 23120 - 25063 (-)
Type: CAZyme
Location: 23120 - 25063 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp900546645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.