dbCAN Logo

Cluster: HRGMv2_0474_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0474_11 HRGMv2_0474_11_18 21576 22697 + 1.A.23.2.1
pfam HRGMv2_0474_11 HRGMv2_0474_11_19 22749 23261 + OMP_b-brl
STP HRGMv2_0474_11 HRGMv2_0474_11_20 23340 24221 - PfkB
TC HRGMv2_0474_11 HRGMv2_0474_11_21 24237 25415 - 2.A.1.7.17
CAZyme HRGMv2_0474_11 HRGMv2_0474_11_22 25467 27305 - GH32
TF HRGMv2_0474_11 HRGMv2_0474_11_23 27456 30239 + HTH_AraC
TC HRGMv2_0474_11 HRGMv2_0474_11_24 30446 33496 + 1.B.14.6.1
TC HRGMv2_0474_11 HRGMv2_0474_11_25 33521 35197 + 8.A.46.1.5
pfam HRGMv2_0474_11 HRGMv2_0474_11_26 35282 36766 + DUF4960
pfam HRGMv2_0474_11 HRGMv2_0474_11_27 36883 37932 + DUF4960
CAZyme HRGMv2_0474_11 HRGMv2_0474_11_28 38089 40509 + GH32
Gene ID: HRGMv2_0474_11_18
Type: TC
Location: 21576 - 22697 (+)
Gene ID: HRGMv2_0474_11_19
Type: pfam
Location: 22749 - 23261 (+)
Gene ID: HRGMv2_0474_11_20
Type: STP
Location: 23340 - 24221 (-)
Gene ID: HRGMv2_0474_11_21
Type: TC
Location: 24237 - 25415 (-)
Gene ID: HRGMv2_0474_11_22
Type: CAZyme
Location: 25467 - 27305 (-)
Gene ID: HRGMv2_0474_11_23
Type: TF
Location: 27456 - 30239 (+)
Gene ID: HRGMv2_0474_11_24
Type: TC
Location: 30446 - 33496 (+)
Gene ID: HRGMv2_0474_11_25
Type: TC
Location: 33521 - 35197 (+)
Gene ID: HRGMv2_0474_11_26
Type: pfam
Location: 35282 - 36766 (+)
Gene ID: HRGMv2_0474_11_27
Type: pfam
Location: 36883 - 37932 (+)
Gene ID: HRGMv2_0474_11_28
Type: CAZyme
Location: 38089 - 40509 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List