Cluster: HRGMv2_0467_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0467
- CGC Family ID: CGCFAM_06931
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0467_6 | HRGMv2_0467_6_39 | 52940 | 54121 | + | GH23 |
| TC | HRGMv2_0467_6 | HRGMv2_0467_6_40 | 54206 | 56749 | - | 3.A.9.1.2 |
| pfam | HRGMv2_0467_6 | HRGMv2_0467_6_41 | 56840 | 59806 | - | PDDEXK_1 |
| TC | HRGMv2_0467_6 | HRGMv2_0467_6_42 | 59879 | 61549 | - | 4.C.1.1.4 |
| pfam | HRGMv2_0467_6 | HRGMv2_0467_6_43 | 61589 | 63256 | - | AMP-binding | AMP-binding_C_3 |
| TC | HRGMv2_0467_6 | HRGMv2_0467_6_44 | 63356 | 64603 | - | 3.A.1.125.1 |
Gene ID: HRGMv2_0467_6_39
Type: CAZyme
Location: 52940 - 54121 (+)
Type: CAZyme
Location: 52940 - 54121 (+)
Gene ID: HRGMv2_0467_6_40
Type: TC
Location: 54206 - 56749 (-)
Type: TC
Location: 54206 - 56749 (-)
Gene ID: HRGMv2_0467_6_41
Type: pfam
Location: 56840 - 59806 (-)
Type: pfam
Location: 56840 - 59806 (-)
Gene ID: HRGMv2_0467_6_42
Type: TC
Location: 59879 - 61549 (-)
Type: TC
Location: 59879 - 61549 (-)
Gene ID: HRGMv2_0467_6_43
Type: pfam
Location: 61589 - 63256 (-)
Type: pfam
Location: 61589 - 63256 (-)
Gene ID: HRGMv2_0467_6_44
Type: TC
Location: 63356 - 64603 (-)
Type: TC
Location: 63356 - 64603 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900546345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.