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Cluster: HRGMv2_0467_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0467_12 HRGMv2_0467_12_18 26766 29972 + 1.B.14.6.1
pfam HRGMv2_0467_12 HRGMv2_0467_12_19 29994 31529 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) HRGMv2_0467_12 HRGMv2_0467_12_20 31544 32986 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0467_12 HRGMv2_0467_12_21 33076 34182 + GH16_3
CAZyme HRGMv2_0467_12 HRGMv2_0467_12_22 34287 36509 + GH3
CAZyme HRGMv2_0467_12 HRGMv2_0467_12_23 36566 38824 + GH3
pfam HRGMv2_0467_12 HRGMv2_0467_12_24 39215 40447 - UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme HRGMv2_0467_12 HRGMv2_0467_12_25 40457 41776 - GT2
Gene ID: HRGMv2_0467_12_18
Type: TC
Location: 26766 - 29972 (+)
Gene ID: HRGMv2_0467_12_19
Type: pfam
Location: 29994 - 31529 (+)
Gene ID: HRGMv2_0467_12_20
Type:
Location: 31544 - 32986 (+)
Gene ID: HRGMv2_0467_12_21
Type: CAZyme
Location: 33076 - 34182 (+)
Gene ID: HRGMv2_0467_12_22
Type: CAZyme
Location: 34287 - 36509 (+)
Gene ID: HRGMv2_0467_12_23
Type: CAZyme
Location: 36566 - 38824 (+)
Gene ID: HRGMv2_0467_12_24
Type: pfam
Location: 39215 - 40447 (-)
Gene ID: HRGMv2_0467_12_25
Type: CAZyme
Location: 40457 - 41776 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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