Cluster: HRGMv2_0438_CGC1
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_0438
- CGC Family ID: CGCFAM_01493
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0438_1 | HRGMv2_0438_1_83 | 90541 | 91020 | + | 9.B.27.3.1 |
| pfam | HRGMv2_0438_1 | HRGMv2_0438_1_84 | 91046 | 91723 | + | Methyltransf_30 |
| pfam | HRGMv2_0438_1 | HRGMv2_0438_1_85 | 91747 | 92652 | + | ZnuA |
| TC | HRGMv2_0438_1 | HRGMv2_0438_1_86 | 92687 | 93496 | + | 3.A.1.15.12 |
| NULL(UNKNOWN) | HRGMv2_0438_1 | HRGMv2_0438_1_87 | 93567 | 95456 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0438_1 | HRGMv2_0438_1_88 | 95446 | 97974 | - | GH9 |
| pfam | HRGMv2_0438_1 | HRGMv2_0438_1_89 | 97980 | 99224 | - | GlcNAc_2-epim |
| pfam | HRGMv2_0438_1 | HRGMv2_0438_1_90 | 99426 | 101114 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0438_1 | HRGMv2_0438_1_91 | 101141 | 104305 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0438_1 | HRGMv2_0438_1_92 | 104439 | 106814 | - | GH31_3 |
| TF | HRGMv2_0438_1 | HRGMv2_0438_1_93 | 107065 | 111009 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_0438_1 | HRGMv2_0438_1_94 | 111130 | 112740 | + | GH35 |
| CAZyme | HRGMv2_0438_1 | HRGMv2_0438_1_95 | 112748 | 115000 | + | GH3 |
| CAZyme | HRGMv2_0438_1 | HRGMv2_0438_1_96 | 115055 | 117589 | + | GH9 |
| CAZyme | HRGMv2_0438_1 | HRGMv2_0438_1_97 | 117768 | 119189 | - | CE20 |
| pfam | HRGMv2_0438_1 | HRGMv2_0438_1_98 | 119357 | 120997 | - | SLFN_AlbA_2 | HATPase_c_4 |
| pfam | HRGMv2_0438_1 | HRGMv2_0438_1_99 | 121694 | 125041 | + | TMEM260-like |
| CAZyme | HRGMv2_0438_1 | HRGMv2_0438_1_100 | 125199 | 125855 | + | CE4 |
Gene ID: HRGMv2_0438_1_83
Type: TC
Location: 90541 - 91020 (+)
Type: TC
Location: 90541 - 91020 (+)
Gene ID: HRGMv2_0438_1_84
Type: pfam
Location: 91046 - 91723 (+)
Type: pfam
Location: 91046 - 91723 (+)
Gene ID: HRGMv2_0438_1_85
Type: pfam
Location: 91747 - 92652 (+)
Type: pfam
Location: 91747 - 92652 (+)
Gene ID: HRGMv2_0438_1_86
Type: TC
Location: 92687 - 93496 (+)
Type: TC
Location: 92687 - 93496 (+)
Gene ID: HRGMv2_0438_1_87
Type:
Location: 93567 - 95456 (-)
Type:
Location: 93567 - 95456 (-)
Gene ID: HRGMv2_0438_1_88
Type: CAZyme
Location: 95446 - 97974 (-)
Type: CAZyme
Location: 95446 - 97974 (-)
Gene ID: HRGMv2_0438_1_89
Type: pfam
Location: 97980 - 99224 (-)
Type: pfam
Location: 97980 - 99224 (-)
Gene ID: HRGMv2_0438_1_90
Type: pfam
Location: 99426 - 101114 (-)
Type: pfam
Location: 99426 - 101114 (-)
Gene ID: HRGMv2_0438_1_91
Type: TC
Location: 101141 - 104305 (-)
Type: TC
Location: 101141 - 104305 (-)
Gene ID: HRGMv2_0438_1_92
Type: CAZyme
Location: 104439 - 106814 (-)
Type: CAZyme
Location: 104439 - 106814 (-)
Gene ID: HRGMv2_0438_1_93
Type: TF
Location: 107065 - 111009 (+)
Type: TF
Location: 107065 - 111009 (+)
Gene ID: HRGMv2_0438_1_94
Type: CAZyme
Location: 111130 - 112740 (+)
Type: CAZyme
Location: 111130 - 112740 (+)
Gene ID: HRGMv2_0438_1_95
Type: CAZyme
Location: 112748 - 115000 (+)
Type: CAZyme
Location: 112748 - 115000 (+)
Gene ID: HRGMv2_0438_1_96
Type: CAZyme
Location: 115055 - 117589 (+)
Type: CAZyme
Location: 115055 - 117589 (+)
Gene ID: HRGMv2_0438_1_97
Type: CAZyme
Location: 117768 - 119189 (-)
Type: CAZyme
Location: 117768 - 119189 (-)
Gene ID: HRGMv2_0438_1_98
Type: pfam
Location: 119357 - 120997 (-)
Type: pfam
Location: 119357 - 120997 (-)
Gene ID: HRGMv2_0438_1_99
Type: pfam
Location: 121694 - 125041 (+)
Type: pfam
Location: 121694 - 125041 (+)
Gene ID: HRGMv2_0438_1_100
Type: CAZyme
Location: 125199 - 125855 (+)
Type: CAZyme
Location: 125199 - 125855 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905197435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0438_1_95 | vegan > omnivore | 1.79507 | 0.04230 |