Cluster: HRGMv2_0436_CGC16
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0436
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0436_51 | HRGMv2_0436_51_64 | 68749 | 70062 | + | 2.A.1.7.2 |
| NULL(UNKNOWN) | HRGMv2_0436_51 | HRGMv2_0436_51_65 | 70494 | 70691 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0436_51 | HRGMv2_0436_51_66 | 70696 | 71265 | + | Sua5_yciO_yrdC |
| TC | HRGMv2_0436_51 | HRGMv2_0436_51_67 | 71320 | 73116 | + | 2.A.49.4.1 |
| pfam | HRGMv2_0436_51 | HRGMv2_0436_51_68 | 73153 | 74175 | + | Formyl_trans_N | Formyl_trans_C |
| TC | HRGMv2_0436_51 | HRGMv2_0436_51_69 | 74288 | 76204 | + | 9.B.18.2.1 |
| pfam | HRGMv2_0436_51 | HRGMv2_0436_51_70 | 76279 | 77388 | - | NTP_transf_5 |
| pfam | HRGMv2_0436_51 | HRGMv2_0436_51_71 | 77417 | 78763 | - | DegT_DnrJ_EryC1 | DegT_DnrJ_EryC1 |
| TC | HRGMv2_0436_51 | HRGMv2_0436_51_72 | 78769 | 79404 | - | 9.B.18.1.2 |
| pfam | HRGMv2_0436_51 | HRGMv2_0436_51_73 | 79414 | 80529 | - | ATP-grasp_3 | CPSase_L_D2 | ATPgrasp_Ter |
| CAZyme | HRGMv2_0436_51 | HRGMv2_0436_51_74 | 80536 | 81714 | - | GT4 |
| CAZyme | HRGMv2_0436_51 | HRGMv2_0436_51_75 | 81725 | 82795 | - | GT4 |
| pfam | HRGMv2_0436_51 | HRGMv2_0436_51_76 | 82800 | 83726 | - | GINT1_N |
| CAZyme | HRGMv2_0436_51 | HRGMv2_0436_51_77 | 84082 | 84966 | - | GT2 |
| pfam | HRGMv2_0436_51 | HRGMv2_0436_51_78 | 84973 | 86115 | - | EpsG |
| NULL(UNKNOWN) | HRGMv2_0436_51 | HRGMv2_0436_51_79 | 86160 | 87347 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0436_51 | HRGMv2_0436_51_80 | 87594 | 88577 | - | GT2 |
Gene ID: HRGMv2_0436_51_64
Type: TC
Location: 68749 - 70062 (+)
Type: TC
Location: 68749 - 70062 (+)
Gene ID: HRGMv2_0436_51_65
Type:
Location: 70494 - 70691 (+)
Type:
Location: 70494 - 70691 (+)
Gene ID: HRGMv2_0436_51_66
Type: pfam
Location: 70696 - 71265 (+)
Type: pfam
Location: 70696 - 71265 (+)
Gene ID: HRGMv2_0436_51_67
Type: TC
Location: 71320 - 73116 (+)
Type: TC
Location: 71320 - 73116 (+)
Gene ID: HRGMv2_0436_51_68
Type: pfam
Location: 73153 - 74175 (+)
Type: pfam
Location: 73153 - 74175 (+)
Gene ID: HRGMv2_0436_51_69
Type: TC
Location: 74288 - 76204 (+)
Type: TC
Location: 74288 - 76204 (+)
Gene ID: HRGMv2_0436_51_70
Type: pfam
Location: 76279 - 77388 (-)
Type: pfam
Location: 76279 - 77388 (-)
Gene ID: HRGMv2_0436_51_71
Type: pfam
Location: 77417 - 78763 (-)
Type: pfam
Location: 77417 - 78763 (-)
Gene ID: HRGMv2_0436_51_72
Type: TC
Location: 78769 - 79404 (-)
Type: TC
Location: 78769 - 79404 (-)
Gene ID: HRGMv2_0436_51_73
Type: pfam
Location: 79414 - 80529 (-)
Type: pfam
Location: 79414 - 80529 (-)
Gene ID: HRGMv2_0436_51_74
Type: CAZyme
Location: 80536 - 81714 (-)
Type: CAZyme
Location: 80536 - 81714 (-)
Gene ID: HRGMv2_0436_51_75
Type: CAZyme
Location: 81725 - 82795 (-)
Type: CAZyme
Location: 81725 - 82795 (-)
Gene ID: HRGMv2_0436_51_76
Type: pfam
Location: 82800 - 83726 (-)
Type: pfam
Location: 82800 - 83726 (-)
Gene ID: HRGMv2_0436_51_77
Type: CAZyme
Location: 84082 - 84966 (-)
Type: CAZyme
Location: 84082 - 84966 (-)
Gene ID: HRGMv2_0436_51_78
Type: pfam
Location: 84973 - 86115 (-)
Type: pfam
Location: 84973 - 86115 (-)
Gene ID: HRGMv2_0436_51_79
Type:
Location: 86160 - 87347 (-)
Type:
Location: 86160 - 87347 (-)
Gene ID: HRGMv2_0436_51_80
Type: CAZyme
Location: 87594 - 88577 (-)
Type: CAZyme
Location: 87594 - 88577 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella intermedia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.