Genome Details
Selected Rep_genome_ID: HRGMv2_0436
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella intermedia
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR075382 | 2,308,038 | 95.16% | 0.02% | China | Asia | CGMR |
| HRGMv2_0436 | 2,757,599 | 99.32% | 0% | Japan | Asia | HRGM |
| MGYG000004629 | 2,382,499 | 98.99% | 0% | Germany | Europe | UHGG |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0436_CGC1 | CGCFAM_00005 | Yes | 3 | 2 | |
| HRGMv2_0436_CGC17 | CGCFAM_00025 | Yes | 4 | 1 | pectin/alpha-glucan |
| HRGMv2_0436_CGC15 | CGCFAM_00181 | Yes | 6 | 3 | |
| HRGMv2_0436_CGC4 | CGCFAM_00341 | Yes | 3 | 1 | |
| HRGMv2_0436_CGC19 | CGCFAM_00368 | Yes | 4 | 1 | |
| HRGMv2_0436_CGC10 | CGCFAM_00601 | Yes | 3 | 1 | |
| HRGMv2_0436_CGC2 | CGCFAM_00808 | Yes | 3 | 1 | |
| HRGMv2_0436_CGC18 | CGCFAM_01162 | Yes | 4 | 1 |
Top CAZyme Families