Cluster: HRGMv2_0434_CGC51
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 11
- Substrate:
- Genome ID: HRGMv2_0434
- CGC Family ID: CGCFAM_03968
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0434_36 | HRGMv2_0434_36_11 | 12413 | 14749 | - | GH35 |
| CAZyme | HRGMv2_0434_36 | HRGMv2_0434_36_12 | 14778 | 16730 | - | GH97 |
| CAZyme | HRGMv2_0434_36 | HRGMv2_0434_36_13 | 16791 | 17786 | - | GH43_17 |
| pfam | HRGMv2_0434_36 | HRGMv2_0434_36_14 | 17801 | 19099 | - | DUF362 |
| CAZyme | HRGMv2_0434_36 | HRGMv2_0434_36_15 | 19125 | 20999 | - | PL33_1 |
| CAZyme | HRGMv2_0434_36 | HRGMv2_0434_36_16 | 21011 | 23407 | - | GH2 |
| CAZyme | HRGMv2_0434_36 | HRGMv2_0434_36_17 | 23435 | 25348 | - | GH43_19 | GH43_29 |
| CAZyme | HRGMv2_0434_36 | HRGMv2_0434_36_18 | 25419 | 27998 | - | GH115 |
| CAZyme | HRGMv2_0434_36 | HRGMv2_0434_36_19 | 28030 | 30057 | - | GH127 |
| CAZyme | HRGMv2_0434_36 | HRGMv2_0434_36_20 | 30054 | 31136 | - | GH43_19 |
| CAZyme | HRGMv2_0434_36 | HRGMv2_0434_36_21 | 31160 | 33502 | - | GH105 | GH154 |
| CAZyme | HRGMv2_0434_36 | HRGMv2_0434_36_22 | 33665 | 34777 | - | GH43_24 |
| TC | HRGMv2_0434_36 | HRGMv2_0434_36_23 | 34780 | 36486 | - | 8.A.46.1.6 |
| TC | HRGMv2_0434_36 | HRGMv2_0434_36_24 | 36506 | 39568 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0434_36_11
Type: CAZyme
Location: 12413 - 14749 (-)
Type: CAZyme
Location: 12413 - 14749 (-)
Gene ID: HRGMv2_0434_36_12
Type: CAZyme
Location: 14778 - 16730 (-)
Type: CAZyme
Location: 14778 - 16730 (-)
Gene ID: HRGMv2_0434_36_13
Type: CAZyme
Location: 16791 - 17786 (-)
Type: CAZyme
Location: 16791 - 17786 (-)
Gene ID: HRGMv2_0434_36_14
Type: pfam
Location: 17801 - 19099 (-)
Type: pfam
Location: 17801 - 19099 (-)
Gene ID: HRGMv2_0434_36_15
Type: CAZyme
Location: 19125 - 20999 (-)
Type: CAZyme
Location: 19125 - 20999 (-)
Gene ID: HRGMv2_0434_36_16
Type: CAZyme
Location: 21011 - 23407 (-)
Type: CAZyme
Location: 21011 - 23407 (-)
Gene ID: HRGMv2_0434_36_17
Type: CAZyme
Location: 23435 - 25348 (-)
Type: CAZyme
Location: 23435 - 25348 (-)
Gene ID: HRGMv2_0434_36_18
Type: CAZyme
Location: 25419 - 27998 (-)
Type: CAZyme
Location: 25419 - 27998 (-)
Gene ID: HRGMv2_0434_36_19
Type: CAZyme
Location: 28030 - 30057 (-)
Type: CAZyme
Location: 28030 - 30057 (-)
Gene ID: HRGMv2_0434_36_20
Type: CAZyme
Location: 30054 - 31136 (-)
Type: CAZyme
Location: 30054 - 31136 (-)
Gene ID: HRGMv2_0434_36_21
Type: CAZyme
Location: 31160 - 33502 (-)
Type: CAZyme
Location: 31160 - 33502 (-)
Gene ID: HRGMv2_0434_36_22
Type: CAZyme
Location: 33665 - 34777 (-)
Type: CAZyme
Location: 33665 - 34777 (-)
Gene ID: HRGMv2_0434_36_23
Type: TC
Location: 34780 - 36486 (-)
Type: TC
Location: 34780 - 36486 (-)
Gene ID: HRGMv2_0434_36_24
Type: TC
Location: 36506 - 39568 (-)
Type: TC
Location: 36506 - 39568 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp017623335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.