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Cluster: HRGMv2_0434_CGC45

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0434_27 HRGMv2_0434_27_1 87 3389 + 1.B.14.6.1
pfam HRGMv2_0434_27 HRGMv2_0434_27_2 3427 5721 + SusD_RagB | SusD-like_3
TC HRGMv2_0434_27 HRGMv2_0434_27_3 5743 8616 + 1.B.14.6.1
pfam HRGMv2_0434_27 HRGMv2_0434_27_4 8636 10462 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) HRGMv2_0434_27 HRGMv2_0434_27_5 10586 12694 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0434_27 HRGMv2_0434_27_6 12810 17411 + PL11_1
NULL(UNKNOWN) HRGMv2_0434_27 HRGMv2_0434_27_7 17802 18068 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0434_27 HRGMv2_0434_27_8 18073 18474 + PIN
CAZyme HRGMv2_0434_27 HRGMv2_0434_27_9 18514 20565 - PL11_1
CAZyme HRGMv2_0434_27 HRGMv2_0434_27_10 20579 23524 - PL26
Gene ID: HRGMv2_0434_27_1
Type: TC
Location: 87 - 3389 (+)
Gene ID: HRGMv2_0434_27_2
Type: pfam
Location: 3427 - 5721 (+)
Gene ID: HRGMv2_0434_27_3
Type: TC
Location: 5743 - 8616 (+)
Gene ID: HRGMv2_0434_27_4
Type: pfam
Location: 8636 - 10462 (+)
Gene ID: HRGMv2_0434_27_5
Type:
Location: 10586 - 12694 (+)
Gene ID: HRGMv2_0434_27_6
Type: CAZyme
Location: 12810 - 17411 (+)
Gene ID: HRGMv2_0434_27_7
Type:
Location: 17802 - 18068 (+)
Gene ID: HRGMv2_0434_27_8
Type: pfam
Location: 18073 - 18474 (+)
Gene ID: HRGMv2_0434_27_9
Type: CAZyme
Location: 18514 - 20565 (-)
Gene ID: HRGMv2_0434_27_10
Type: CAZyme
Location: 20579 - 23524 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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