dbCAN HGM

Cluster: HRGMv2_0434_CGC28

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_0434_11	HRGMv2_0434_11_99	92484	93374	-	2.A.115.1.2
TF	HRGMv2_0434_11	HRGMv2_0434_11_100	93532	97644	-	HTH_AraC
TC	HRGMv2_0434_11	HRGMv2_0434_11_101	98131	101451	+	1.B.14.6.1
pfam	HRGMv2_0434_11	HRGMv2_0434_11_102	101464	103503	+	SusD_RagB \| SusD-like_3
CAZyme	HRGMv2_0434_11	HRGMv2_0434_11_103	103664	106765	+	GH2
CAZyme	HRGMv2_0434_11	HRGMv2_0434_11_104	106762	107742	+	GH16_3
CAZyme	HRGMv2_0434_11	HRGMv2_0434_11_105	107755	109749	+	PL27
CAZyme	HRGMv2_0434_11	HRGMv2_0434_11_106	109743	111062	+	GH43_24
CAZyme	HRGMv2_0434_11	HRGMv2_0434_11_107	111083	113434	+	GH115

Gene ID: HRGMv2_0434_11_99
Type: TC
Location: 92484 - 93374 (-)

Gene ID: HRGMv2_0434_11_100
Type: TF
Location: 93532 - 97644 (-)

Gene ID: HRGMv2_0434_11_101
Type: TC
Location: 98131 - 101451 (+)

Gene ID: HRGMv2_0434_11_102
Type: pfam
Location: 101464 - 103503 (+)

Gene ID: HRGMv2_0434_11_103
Type: CAZyme
Location: 103664 - 106765 (+)

Gene ID: HRGMv2_0434_11_104
Type: CAZyme
Location: 106762 - 107742 (+)

Gene ID: HRGMv2_0434_11_105
Type: CAZyme
Location: 107755 - 109749 (+)

Gene ID: HRGMv2_0434_11_106
Type: CAZyme
Location: 109743 - 111062 (+)

Gene ID: HRGMv2_0434_11_107
Type: CAZyme
Location: 111083 - 113434 (+)

Taxonomic Lineage

Domain

→

Phylum

→

Class

→

Order

→

Family

→

Genus

→

Species

Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.