Cluster: HRGMv2_0434_CGC19
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_0434
- CGC Family ID: CGCFAM_00001
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0434_5 | HRGMv2_0434_5_48 | 57093 | 57752 | + | 3.A.1.122.14 |
| pfam | HRGMv2_0434_5 | HRGMv2_0434_5_49 | 57749 | 60091 | + | FtsX | FtsX | MacB_PCD |
| TC | HRGMv2_0434_5 | HRGMv2_0434_5_50 | 60885 | 64100 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0434_5 | HRGMv2_0434_5_51 | 64127 | 65641 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | HRGMv2_0434_5 | HRGMv2_0434_5_52 | 65667 | 67091 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0434_5 | HRGMv2_0434_5_53 | 67202 | 68344 | + | GH16_3 |
| CAZyme | HRGMv2_0434_5 | HRGMv2_0434_5_54 | 68540 | 70783 | + | GH3 |
| CAZyme | HRGMv2_0434_5 | HRGMv2_0434_5_55 | 71024 | 73333 | + | GH3 |
| pfam | HRGMv2_0434_5 | HRGMv2_0434_5_56 | 73818 | 75461 | - | DUF6377 |
| TC | HRGMv2_0434_5 | HRGMv2_0434_5_57 | 75813 | 78791 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0434_5 | HRGMv2_0434_5_58 | 78805 | 80307 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0434_5 | HRGMv2_0434_5_59 | 80472 | 81983 | + | GH30_3 |
Gene ID: HRGMv2_0434_5_48
Type: TC
Location: 57093 - 57752 (+)
Type: TC
Location: 57093 - 57752 (+)
Gene ID: HRGMv2_0434_5_49
Type: pfam
Location: 57749 - 60091 (+)
Type: pfam
Location: 57749 - 60091 (+)
Gene ID: HRGMv2_0434_5_50
Type: TC
Location: 60885 - 64100 (+)
Type: TC
Location: 60885 - 64100 (+)
Gene ID: HRGMv2_0434_5_51
Type: pfam
Location: 64127 - 65641 (+)
Type: pfam
Location: 64127 - 65641 (+)
Gene ID: HRGMv2_0434_5_52
Type:
Location: 65667 - 67091 (+)
Type:
Location: 65667 - 67091 (+)
Gene ID: HRGMv2_0434_5_53
Type: CAZyme
Location: 67202 - 68344 (+)
Type: CAZyme
Location: 67202 - 68344 (+)
Gene ID: HRGMv2_0434_5_54
Type: CAZyme
Location: 68540 - 70783 (+)
Type: CAZyme
Location: 68540 - 70783 (+)
Gene ID: HRGMv2_0434_5_55
Type: CAZyme
Location: 71024 - 73333 (+)
Type: CAZyme
Location: 71024 - 73333 (+)
Gene ID: HRGMv2_0434_5_56
Type: pfam
Location: 73818 - 75461 (-)
Type: pfam
Location: 73818 - 75461 (-)
Gene ID: HRGMv2_0434_5_57
Type: TC
Location: 75813 - 78791 (+)
Type: TC
Location: 75813 - 78791 (+)
Gene ID: HRGMv2_0434_5_58
Type: pfam
Location: 78805 - 80307 (+)
Type: pfam
Location: 78805 - 80307 (+)
Gene ID: HRGMv2_0434_5_59
Type: CAZyme
Location: 80472 - 81983 (+)
Type: CAZyme
Location: 80472 - 81983 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp017623335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.