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Cluster: HRGMv2_0429_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0429_1 HRGMv2_0429_1_370 449114 451648 + CE8
CAZyme HRGMv2_0429_1 HRGMv2_0429_1_371 451803 453830 + GH28
TC HRGMv2_0429_1 HRGMv2_0429_1_372 454085 457333 + 1.B.14.6.1
TC HRGMv2_0429_1 HRGMv2_0429_1_373 457352 459295 + 8.A.46.1.2
pfam HRGMv2_0429_1 HRGMv2_0429_1_374 459326 460978 + DUF5123
TC HRGMv2_0429_1 HRGMv2_0429_1_375 461485 464736 + 1.B.14.6.1
pfam HRGMv2_0429_1 HRGMv2_0429_1_376 464757 466601 + SusD_RagB | SusD-like_3
pfam HRGMv2_0429_1 HRGMv2_0429_1_377 466638 468239 + fn3 | DUF4957 | DUF5123
CAZyme HRGMv2_0429_1 HRGMv2_0429_1_378 468396 469868 - GH57
CAZyme HRGMv2_0429_1 HRGMv2_0429_1_379 469899 471167 - GT4
CAZyme HRGMv2_0429_1 HRGMv2_0429_1_380 471186 473129 - GH133
Gene ID: HRGMv2_0429_1_370
Type: CAZyme
Location: 449114 - 451648 (+)
Gene ID: HRGMv2_0429_1_371
Type: CAZyme
Location: 451803 - 453830 (+)
Gene ID: HRGMv2_0429_1_372
Type: TC
Location: 454085 - 457333 (+)
Gene ID: HRGMv2_0429_1_373
Type: TC
Location: 457352 - 459295 (+)
Gene ID: HRGMv2_0429_1_374
Type: pfam
Location: 459326 - 460978 (+)
Gene ID: HRGMv2_0429_1_375
Type: TC
Location: 461485 - 464736 (+)
Gene ID: HRGMv2_0429_1_376
Type: pfam
Location: 464757 - 466601 (+)
Gene ID: HRGMv2_0429_1_377
Type: pfam
Location: 466638 - 468239 (+)
Gene ID: HRGMv2_0429_1_378
Type: CAZyme
Location: 468396 - 469868 (-)
Gene ID: HRGMv2_0429_1_379
Type: CAZyme
Location: 469899 - 471167 (-)
Gene ID: HRGMv2_0429_1_380
Type: CAZyme
Location: 471186 - 473129 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0429_1_373 vegetarian > omnivore 1.06029 0.01573

🧭 Explore Read Mapping of CGC

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