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Cluster: HRGMv2_0429_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0429_23 HRGMv2_0429_23_3 3353 6169 - 1.B.14.12.3
pfam HRGMv2_0429_23 HRGMv2_0429_23_4 6320 7957 - DUF6377
TC HRGMv2_0429_23 HRGMv2_0429_23_5 8186 11161 + 1.B.14.6.1
TC HRGMv2_0429_23 HRGMv2_0429_23_6 11233 12960 + 8.A.46.1.1
CAZyme HRGMv2_0429_23 HRGMv2_0429_23_7 13056 15158 + GH97
CAZyme HRGMv2_0429_23 HRGMv2_0429_23_8 15217 16953 + GH13_44
TF HRGMv2_0429_23 HRGMv2_0429_23_9 17116 17433 + HTH_3
pfam HRGMv2_0429_23 HRGMv2_0429_23_10 17423 18682 + HipA_C | Couple_hipA
TC HRGMv2_0429_23 HRGMv2_0429_23_11 18819 20189 + 2.A.62.1.3
Gene ID: HRGMv2_0429_23_3
Type: TC
Location: 3353 - 6169 (-)
Gene ID: HRGMv2_0429_23_4
Type: pfam
Location: 6320 - 7957 (-)
Gene ID: HRGMv2_0429_23_5
Type: TC
Location: 8186 - 11161 (+)
Gene ID: HRGMv2_0429_23_6
Type: TC
Location: 11233 - 12960 (+)
Gene ID: HRGMv2_0429_23_7
Type: CAZyme
Location: 13056 - 15158 (+)
Gene ID: HRGMv2_0429_23_8
Type: CAZyme
Location: 15217 - 16953 (+)
Gene ID: HRGMv2_0429_23_9
Type: TF
Location: 17116 - 17433 (+)
Gene ID: HRGMv2_0429_23_10
Type: pfam
Location: 17423 - 18682 (+)
Gene ID: HRGMv2_0429_23_11
Type: TC
Location: 18819 - 20189 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0429_23_9 vegetarian > vegan 1.24067 0.00567
HRGMv2_0429_23_10 vegetarian > vegan 1.46752 0.00567

🧭 Explore Read Mapping of CGC

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