Cluster: HRGMv2_0429_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0429
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0429_1 | HRGMv2_0429_1_322 | 389374 | 391692 | - | GH3 |
| NULL(UNKNOWN) | HRGMv2_0429_1 | HRGMv2_0429_1_323 | 391745 | 392719 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0429_1 | HRGMv2_0429_1_324 | 392809 | 394590 | - | 8.A.46.2.2 |
| TC | HRGMv2_0429_1 | HRGMv2_0429_1_325 | 394648 | 397830 | - | 1.B.14.6.2 |
| CAZyme | HRGMv2_0429_1 | HRGMv2_0429_1_326 | 397880 | 399058 | - | GH5_4 |
Gene ID: HRGMv2_0429_1_322
Type: CAZyme
Location: 389374 - 391692 (-)
Type: CAZyme
Location: 389374 - 391692 (-)
Gene ID: HRGMv2_0429_1_323
Type:
Location: 391745 - 392719 (-)
Type:
Location: 391745 - 392719 (-)
Gene ID: HRGMv2_0429_1_324
Type: TC
Location: 392809 - 394590 (-)
Type: TC
Location: 392809 - 394590 (-)
Gene ID: HRGMv2_0429_1_325
Type: TC
Location: 394648 - 397830 (-)
Type: TC
Location: 394648 - 397830 (-)
Gene ID: HRGMv2_0429_1_326
Type: CAZyme
Location: 397880 - 399058 (-)
Type: CAZyme
Location: 397880 - 399058 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900548535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0429_1_323 | vegetarian > vegan | 1.08226 | 0.00567 |
| HRGMv2_0429_1_324 | vegetarian > omnivore | 1.49240 | 0.01573 |
| HRGMv2_0429_1_324 | vegetarian > vegan | 1.07098 | 0.00567 |