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Cluster: HRGMv2_0429_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0429_16 HRGMv2_0429_16_27 28091 30433 - GH3
pfam HRGMv2_0429_16 HRGMv2_0429_16_28 30738 32447 + DUF6377
CAZyme HRGMv2_0429_16 HRGMv2_0429_16_29 32556 34820 - GH3
TC HRGMv2_0429_16 HRGMv2_0429_16_30 35386 38649 + 1.B.14.6.1
pfam HRGMv2_0429_16 HRGMv2_0429_16_31 38680 40203 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) HRGMv2_0429_16 HRGMv2_0429_16_32 40225 41616 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0429_16 HRGMv2_0429_16_33 41706 42860 + GH16_3
CAZyme HRGMv2_0429_16 HRGMv2_0429_16_34 42941 44170 - GH5_46
Gene ID: HRGMv2_0429_16_27
Type: CAZyme
Location: 28091 - 30433 (-)
Gene ID: HRGMv2_0429_16_28
Type: pfam
Location: 30738 - 32447 (+)
Gene ID: HRGMv2_0429_16_29
Type: CAZyme
Location: 32556 - 34820 (-)
Gene ID: HRGMv2_0429_16_30
Type: TC
Location: 35386 - 38649 (+)
Gene ID: HRGMv2_0429_16_31
Type: pfam
Location: 38680 - 40203 (+)
Gene ID: HRGMv2_0429_16_32
Type:
Location: 40225 - 41616 (+)
Gene ID: HRGMv2_0429_16_33
Type: CAZyme
Location: 41706 - 42860 (+)
Gene ID: HRGMv2_0429_16_34
Type: CAZyme
Location: 42941 - 44170 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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