Cluster: HRGMv2_0429_CGC38
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0429
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0429_14 | HRGMv2_0429_14_73 | 82679 | 85882 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0429_14 | HRGMv2_0429_14_74 | 85947 | 87701 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | HRGMv2_0429_14 | HRGMv2_0429_14_75 | 87791 | 89545 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0429_14 | HRGMv2_0429_14_76 | 89658 | 92345 | + | GH43_4 |
| CAZyme | HRGMv2_0429_14 | HRGMv2_0429_14_77 | 92357 | 93400 | + | GH43_5 |
Gene ID: HRGMv2_0429_14_73
Type: TC
Location: 82679 - 85882 (+)
Type: TC
Location: 82679 - 85882 (+)
Gene ID: HRGMv2_0429_14_74
Type: pfam
Location: 85947 - 87701 (+)
Type: pfam
Location: 85947 - 87701 (+)
Gene ID: HRGMv2_0429_14_75
Type:
Location: 87791 - 89545 (+)
Type:
Location: 87791 - 89545 (+)
Gene ID: HRGMv2_0429_14_76
Type: CAZyme
Location: 89658 - 92345 (+)
Type: CAZyme
Location: 89658 - 92345 (+)
Gene ID: HRGMv2_0429_14_77
Type: CAZyme
Location: 92357 - 93400 (+)
Type: CAZyme
Location: 92357 - 93400 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900548535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0429_14_73 | vegetarian > vegan | 1.05493 | 0.00567 |
| HRGMv2_0429_14_74 | vegetarian > vegan | 1.00607 | 0.00567 |
| HRGMv2_0429_14_76 | vegetarian > vegan | 1.01721 | 0.00567 |