Cluster: HRGMv2_0429_CGC28
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate: pectin/galactan
- Genome ID: HRGMv2_0429
- CGC Family ID: CGCFAM_00031
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0429_8 | HRGMv2_0429_8_84 | 113151 | 114515 | + | 2.A.22.5.3 |
| TC | HRGMv2_0429_8 | HRGMv2_0429_8_85 | 114541 | 115896 | + | 2.A.22.5.3 |
| pfam | HRGMv2_0429_8 | HRGMv2_0429_8_86 | 115893 | 116831 | - | HHH | HHH_3 | HHH_3 | HHH_3 |
| TC | HRGMv2_0429_8 | HRGMv2_0429_8_87 | 117448 | 120417 | + | 1.B.14.6.1 |
| TC | HRGMv2_0429_8 | HRGMv2_0429_8_88 | 120568 | 122205 | + | 8.A.46.1.1 |
| pfam | HRGMv2_0429_8 | HRGMv2_0429_8_89 | 122217 | 123608 | + | SusE | DUF5111 | DUF5114 |
| CAZyme | HRGMv2_0429_8 | HRGMv2_0429_8_90 | 123654 | 124790 | + | GH53 |
| CAZyme | HRGMv2_0429_8 | HRGMv2_0429_8_91 | 124826 | 127270 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_0429_8 | HRGMv2_0429_8_92 | 127477 | 128355 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0429_8 | HRGMv2_0429_8_93 | 128401 | 129816 | + | 2.A.50.2.1 |
Gene ID: HRGMv2_0429_8_84
Type: TC
Location: 113151 - 114515 (+)
Type: TC
Location: 113151 - 114515 (+)
Gene ID: HRGMv2_0429_8_85
Type: TC
Location: 114541 - 115896 (+)
Type: TC
Location: 114541 - 115896 (+)
Gene ID: HRGMv2_0429_8_86
Type: pfam
Location: 115893 - 116831 (-)
Type: pfam
Location: 115893 - 116831 (-)
Gene ID: HRGMv2_0429_8_87
Type: TC
Location: 117448 - 120417 (+)
Type: TC
Location: 117448 - 120417 (+)
Gene ID: HRGMv2_0429_8_88
Type: TC
Location: 120568 - 122205 (+)
Type: TC
Location: 120568 - 122205 (+)
Gene ID: HRGMv2_0429_8_89
Type: pfam
Location: 122217 - 123608 (+)
Type: pfam
Location: 122217 - 123608 (+)
Gene ID: HRGMv2_0429_8_90
Type: CAZyme
Location: 123654 - 124790 (+)
Type: CAZyme
Location: 123654 - 124790 (+)
Gene ID: HRGMv2_0429_8_91
Type: CAZyme
Location: 124826 - 127270 (+)
Type: CAZyme
Location: 124826 - 127270 (+)
Gene ID: HRGMv2_0429_8_92
Type:
Location: 127477 - 128355 (+)
Type:
Location: 127477 - 128355 (+)
Gene ID: HRGMv2_0429_8_93
Type: TC
Location: 128401 - 129816 (+)
Type: TC
Location: 128401 - 129816 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900548535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0429_8_87 | vegan > omnivore | 1.92116 | 0.03201 |
| HRGMv2_0429_8_87 | vegetarian > omnivore | 1.94308 | 0.00566 |
| HRGMv2_0429_8_88 | vegetarian > omnivore | 2.32014 | 0.00566 |
| HRGMv2_0429_8_89 | vegetarian > omnivore | 1.63101 | 0.01573 |